Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001718A_C01 KMC001718A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568312.1| ids-4 protein - like; protein id: At5g15330.1, ... 77 1e-13
pir||T49968 ids-4 protein-like - Arabidopsis thaliana gi|7671502... 77 1e-13
pir||T05905 ids-4 protein - barley gi|285636|dbj|BAA03206.1| ORF... 57 1e-07
gb|AAL79759.1|AC096687_23 putative signal transduction protein [... 53 2e-06
ref|NP_189255.1| CHP-rich zinc finger protein, putative; protein... 35 0.40
>ref|NP_568312.1| ids-4 protein - like; protein id: At5g15330.1, supported by cDNA:
gi_15215821 [Arabidopsis thaliana]
gi|15215822|gb|AAK91456.1| AT5g15330/F8M21_220
[Arabidopsis thaliana]
Length = 318
Score = 77.0 bits (188), Expect = 1e-13
Identities = 45/87 (51%), Positives = 60/87 (68%)
Frame = -2
Query: 513 NATNALPETSSNLGDEPMYLYRSTLAAMRAIKGLQKASSTCNRFSFSSLLRNQDADSTGA 334
N+ ETSS LG+E + +Y+STLAAMRAI+GLQKASST N SFSSLL+N+D ++
Sbjct: 238 NSPRISAETSSTLGNENLDIYKSTLAAMRAIRGLQKASSTYNPLSFSSLLQNEDDET--- 294
Query: 333 VTAENSAANSPDTLQNEESASKEEFDP 253
VTAENS + N++ + KE+ P
Sbjct: 295 VTAENSPNSG-----NKDDSEKEDTGP 316
>pir||T49968 ids-4 protein-like - Arabidopsis thaliana
gi|7671502|emb|CAB89343.1| ids-4 protein-like
[Arabidopsis thaliana]
Length = 387
Score = 77.0 bits (188), Expect = 1e-13
Identities = 45/87 (51%), Positives = 60/87 (68%)
Frame = -2
Query: 513 NATNALPETSSNLGDEPMYLYRSTLAAMRAIKGLQKASSTCNRFSFSSLLRNQDADSTGA 334
N+ ETSS LG+E + +Y+STLAAMRAI+GLQKASST N SFSSLL+N+D ++
Sbjct: 307 NSPRISAETSSTLGNENLDIYKSTLAAMRAIRGLQKASSTYNPLSFSSLLQNEDDET--- 363
Query: 333 VTAENSAANSPDTLQNEESASKEEFDP 253
VTAENS + N++ + KE+ P
Sbjct: 364 VTAENSPNSG-----NKDDSEKEDTGP 385
>pir||T05905 ids-4 protein - barley gi|285636|dbj|BAA03206.1| ORF [Hordeum
vulgare subsp. vulgare]
Length = 189
Score = 57.4 bits (137), Expect = 1e-07
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = -2
Query: 516 DNATNALPETSSNLGDEPMYLYRSTLAAMRAIKGLQKASSTCNRFSFSSLLRNQDADS-T 340
++A + PE+SS+ E +YRSTLAAM+AI+GL+KASST N S + +D ++ +
Sbjct: 83 NDAASRDPESSSDA--ETSEVYRSTLAAMKAIEGLKKASSTYNALSLARFFHGEDGEACS 140
Query: 339 GAVTAENSAANSPDTLQNEES 277
GAVT+E+S +S Q E++
Sbjct: 141 GAVTSESSLLDSLTDSQVEDA 161
>gb|AAL79759.1|AC096687_23 putative signal transduction protein [Oryza sativa]
Length = 320
Score = 53.1 bits (126), Expect = 2e-06
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = -2
Query: 513 NATNALPETSSNLGDEPMYLYRSTLAAMRAIKGLQKASSTCNRFSFSSLLRNQDADS-TG 337
N A + +S++ E +YRSTLAAM+AI+GL+KASST N S + +D ++ +G
Sbjct: 218 NDDAASHDPASSVDVETSDVYRSTLAAMKAIQGLRKASSTYNPLSLARFFHGEDGEACSG 277
Query: 336 AVTAENSAANSPDTLQNEESASKE 265
A+T+E S + S +++ E KE
Sbjct: 278 AITSE-SDSYSDSQIEDAEDDDKE 300
>ref|NP_189255.1| CHP-rich zinc finger protein, putative; protein id: At3g26240.1
[Arabidopsis thaliana] gi|11994443|dbj|BAB02445.1|
gb|AAC78273.1~gene_id:MTC11.15~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 922
Score = 35.4 bits (80), Expect = 0.40
Identities = 26/84 (30%), Positives = 35/84 (40%)
Frame = +2
Query: 38 LSCCILMSPLTNYNHNSKPLNSKCYKEANKV*KLWGGRDSVQVLLSKLKKVHYLCLIYCF 217
LSC L+ L NY S+P+ S C G R ++ L L + C +YC
Sbjct: 849 LSCGALLI-LPNYLWMSRPICSSC-----------GNRCPQRIFLFLLSGASFFCSVYCI 896
Query: 218 ARVKRYCFV*GLGSNSSLLALSSF 289
+ F GL + L LSSF
Sbjct: 897 PTTRELGFFPGLEAGELALILSSF 920
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,042,019
Number of Sequences: 1393205
Number of extensions: 7254184
Number of successful extensions: 24295
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 23061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24267
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
