Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001717A_C01 KMC001717A_c01
(454 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176500.1| membrane protein, putative; protein id: At1g631... 164 5e-40
ref|NP_196342.1| membrane protein; protein id: At5g07250.1, supp... 141 3e-33
ref|NP_172735.1| membrane protein, putative; protein id: At1g127... 136 9e-32
pir||G86260 protein T12C24.28 [imported] - Arabidopsis thaliana ... 133 7e-31
ref|NP_194038.1| putative membrane protein; protein id: At4g2307... 128 3e-29
>ref|NP_176500.1| membrane protein, putative; protein id: At1g63120.1 [Arabidopsis
thaliana] gi|25404407|pir||F96656 probable membrane
protein F16M19.4 [imported] - Arabidopsis thaliana
gi|12323258|gb|AAG51610.1|AC010795_14 membrane protein,
putative; 61952-60281 [Arabidopsis thaliana]
gi|28393358|gb|AAO42103.1| putative membrane protein
[Arabidopsis thaliana] gi|28827620|gb|AAO50654.1|
putative membrane protein [Arabidopsis thaliana]
Length = 317
Score = 164 bits (414), Expect = 5e-40
Identities = 76/124 (61%), Positives = 93/124 (74%), Gaps = 5/124 (4%)
Frame = +3
Query: 96 MSRRDLEGGRGSKRAASNAY-----DPETHWTSWLVPLFVAVNVVLFIAAMYVNNCPRKN 260
M+ RD+E R A+N Y ETHWTSWL+P V N+ +FIA M+VN+CP+K
Sbjct: 1 MANRDVERVGKKNRGANNNYFYEESSGETHWTSWLIPAIVVANLAVFIAVMFVNDCPKKI 60
Query: 261 PGFDGDCVARFLGRFSFQPLRENPLFGPSSATLTKMGALKWDDVVNRHQGWRLFTCIWLH 440
G + +CVARFLGRFSFQPL+ENPLFGPSS+TL KMGAL+W VV+ HQGWRL +C+WLH
Sbjct: 61 TGPNKECVARFLGRFSFQPLKENPLFGPSSSTLEKMGALEWRKVVHEHQGWRLLSCMWLH 120
Query: 441 AGII 452
AGII
Sbjct: 121 AGII 124
>ref|NP_196342.1| membrane protein; protein id: At5g07250.1, supported by cDNA:
gi_16648761, supported by cDNA: gi_20466142 [Arabidopsis
thaliana] gi|11358506|pir||T48496 membrane protein -
Arabidopsis thaliana gi|7546703|emb|CAB87281.1| membrane
protein [Arabidopsis thaliana]
gi|16648762|gb|AAL25572.1| AT5g07250/T28J14_190
[Arabidopsis thaliana] gi|20466143|gb|AAM19993.1|
AT5g07250/T28J14_190 [Arabidopsis thaliana]
Length = 346
Score = 141 bits (355), Expect = 3e-33
Identities = 62/98 (63%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +3
Query: 165 THWTSWLVPLFVAVNVVLFIAAMYVNNCPR--KNPGFDGDCVARFLGRFSFQPLRENPLF 338
+ WTSWLVP+FV NV +F+ AM+VNNCP ++ G CVA+FLGR SF+PLR NPLF
Sbjct: 51 SRWTSWLVPMFVVANVAVFVVAMFVNNCPNHFESHRLRGHCVAKFLGRLSFEPLRTNPLF 110
Query: 339 GPSSATLTKMGALKWDDVVNRHQGWRLFTCIWLHAGII 452
GPSS TL K+GAL+W VV + +GWRL TCIWLHAG+I
Sbjct: 111 GPSSHTLEKLGALEWSKVVEKKEGWRLLTCIWLHAGVI 148
>ref|NP_172735.1| membrane protein, putative; protein id: At1g12750.1, supported by
cDNA: gi_17529033 [Arabidopsis thaliana]
gi|17529034|gb|AAL38727.1| putative membrane protein
[Arabidopsis thaliana] gi|20259083|gb|AAM14257.1|
putative membrane protein [Arabidopsis thaliana]
Length = 307
Score = 136 bits (343), Expect = 9e-32
Identities = 64/119 (53%), Positives = 78/119 (64%)
Frame = +3
Query: 96 MSRRDLEGGRGSKRAASNAYDPETHWTSWLVPLFVAVNVVLFIAAMYVNNCPRKNPGFDG 275
M RD+E GR + +T WT+WL P V NV +FI MY N+CP+ G +G
Sbjct: 1 MRSRDMERGRKHRG--------DTQWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANG 52
Query: 276 DCVARFLGRFSFQPLRENPLFGPSSATLTKMGALKWDDVVNRHQGWRLFTCIWLHAGII 452
DCVA+ L RFSFQPLRENP GPSS+TL K+GAL W VV ++ WRL T +WLHAGII
Sbjct: 53 DCVAKLLRRFSFQPLRENPFLGPSSSTLEKLGALDWKKVVQGNEKWRLITAMWLHAGII 111
>pir||G86260 protein T12C24.28 [imported] - Arabidopsis thaliana
gi|9502383|gb|AAF88090.1|AC025417_18 T12C24.28
[Arabidopsis thaliana]
Length = 302
Score = 133 bits (335), Expect = 7e-31
Identities = 58/97 (59%), Positives = 70/97 (71%)
Frame = +3
Query: 162 ETHWTSWLVPLFVAVNVVLFIAAMYVNNCPRKNPGFDGDCVARFLGRFSFQPLRENPLFG 341
+T WT+WL P V NV +FI MY N+CP+ G +GDCVA+ L RFSFQPLRENP G
Sbjct: 10 DTQWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANGDCVAKLLRRFSFQPLRENPFLG 69
Query: 342 PSSATLTKMGALKWDDVVNRHQGWRLFTCIWLHAGII 452
PSS+TL K+GAL W VV ++ WRL T +WLHAGII
Sbjct: 70 PSSSTLEKLGALDWKKVVQGNEKWRLITAMWLHAGII 106
>ref|NP_194038.1| putative membrane protein; protein id: At4g23070.1 [Arabidopsis
thaliana] gi|7486577|pir||T05139 hypothetical protein
F7H19.260 - Arabidopsis thaliana
gi|3292833|emb|CAA19823.1| putative membrane protein
[Arabidopsis thaliana] gi|7269154|emb|CAB79262.1|
putative membrane protein [Arabidopsis thaliana]
Length = 313
Score = 128 bits (321), Expect = 3e-29
Identities = 57/115 (49%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Frame = +3
Query: 114 EGGRGSKRAASNAYD--PETHWTSWLVPLFVAVNVVLFIAAMYVNNCPRKNPGFDGDCVA 287
E G R +N + P+ W SW++P+ V NVV+F+ MY N+CP K+ C+A
Sbjct: 8 EDPEGGSRETNNGGETTPDMQWRSWIIPIVVIANVVVFVVVMYYNDCPHKSHR----CLA 63
Query: 288 RFLGRFSFQPLRENPLFGPSSATLTKMGALKWDDVVNRHQGWRLFTCIWLHAGII 452
+FLGRFSF+ + NPL GPSS+TL KMGAL W +V++ Q WRL TC+WLHAG+I
Sbjct: 64 KFLGRFSFESFKSNPLLGPSSSTLEKMGALAWGKIVHKRQVWRLLTCMWLHAGVI 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,489,262
Number of Sequences: 1393205
Number of extensions: 10465549
Number of successful extensions: 30999
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 29963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30969
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
