Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001715A_C01 KMC001715A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190006.1| protein kinase-like protein; protein id: At3g44... 41 0.013
dbj|BAB63817.1| putative kinase [Oryza sativa (japonica cultivar... 41 0.013
gb|AAL04423.1| LSTK-1-like kinase [Lycopersicon esculentum] 39 0.037
ref|NP_187132.1| putative kinase; protein id: At3g04810.1 [Arabi... 39 0.048
pir||B96587 hypothetical protein F20D21.33 [imported] - Arabidop... 39 0.048
>ref|NP_190006.1| protein kinase-like protein; protein id: At3g44200.1 [Arabidopsis
thaliana] gi|11358724|pir||T49136 protein kinase-like
protein - Arabidopsis thaliana
gi|7635465|emb|CAB88428.1| protein kinase-like protein
[Arabidopsis thaliana]
Length = 941
Score = 40.8 bits (94), Expect = 0.013
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3
Query: 550 IVETPSYRCSELLPDFPYGFNSGIW 476
+V TP+Y C ELL D PYGF S IW
Sbjct: 167 VVGTPNYMCPELLADIPYGFKSDIW 191
>dbj|BAB63817.1| putative kinase [Oryza sativa (japonica cultivar-group)]
gi|21644639|dbj|BAC01197.1| putative kinase [Oryza
sativa (japonica cultivar-group)]
Length = 943
Score = 40.8 bits (94), Expect = 0.013
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3
Query: 550 IVETPSYRCSELLPDFPYGFNSGIW 476
+V TP+Y C ELL D PYGF S IW
Sbjct: 167 VVGTPNYMCPELLADIPYGFKSDIW 191
>gb|AAL04423.1| LSTK-1-like kinase [Lycopersicon esculentum]
Length = 609
Score = 39.3 bits (90), Expect = 0.037
Identities = 17/25 (68%), Positives = 17/25 (68%)
Frame = -3
Query: 550 IVETPSYRCSELLPDFPYGFNSGIW 476
IV TPSY C ELL D PYG S IW
Sbjct: 163 IVGTPSYMCPELLADIPYGSKSDIW 187
>ref|NP_187132.1| putative kinase; protein id: At3g04810.1 [Arabidopsis thaliana]
gi|12322861|gb|AAG51423.1|AC009465_23 putative kinase;
86849-83844 [Arabidopsis thaliana]
gi|24030188|gb|AAN41275.1| putative kinase [Arabidopsis
thaliana]
Length = 606
Score = 38.9 bits (89), Expect = 0.048
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = -3
Query: 550 IVETPSYRCSELLPDFPYGFNSGIW 476
+V TPSY C ELL D PYG S IW
Sbjct: 163 VVGTPSYMCPELLADIPYGSKSDIW 187
>pir||B96587 hypothetical protein F20D21.33 [imported] - Arabidopsis thaliana
gi|4585993|gb|AAD25629.1|AC005287_31 Similar to
serine/threonine kinases [Arabidopsis thaliana]
Length = 200
Score = 38.9 bits (89), Expect = 0.048
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = -3
Query: 550 IVETPSYRCSELLPDFPYGFNSGIW 476
+V TPSY C ELL D PYG S IW
Sbjct: 163 VVGTPSYMCPELLADIPYGSKSDIW 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,022,886
Number of Sequences: 1393205
Number of extensions: 9410982
Number of successful extensions: 27773
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 27405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27773
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
