Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001713A_C01 KMC001713A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00964.1|AC079736_4 unknown protein [Oryza sativa] 195 3e-49
ref|NP_188442.1| WD-repeat protein, putative; protein id: At3g18... 162 3e-39
ref|NP_179795.1| unknown protein; protein id: At2g22040.1 [Arabi... 144 8e-34
ref|NP_595682.1| pop3, a WD repeat protein [Schizosaccharomyces ... 120 1e-26
ref|NP_014392.1| Required for amino acid permease transport from... 116 2e-25
>gb|AAK00964.1|AC079736_4 unknown protein [Oryza sativa]
Length = 316
Score = 195 bits (495), Expect = 3e-49
Identities = 88/106 (83%), Positives = 95/106 (89%)
Frame = -2
Query: 529 NSYILKCLLSPEFCEPPRYLATASADHTVKIWNVDGFTLDKTLIGHQRWVWDCVFSVDGA 350
+ YILKCLLSPEFC+P RYLATAS+DHTVKIWNVDGF L+KTL+GHQRWVWDCVFSVDGA
Sbjct: 211 DGYILKCLLSPEFCDPNRYLATASSDHTVKIWNVDGFKLEKTLVGHQRWVWDCVFSVDGA 270
Query: 349 YLITASSDTTARLWSMSTGEDIKVYQGHHKATTCCALHDGAEPASS 212
YLITASSDTTARLW+MSTGE I+VY HHK CCALHDGAE A S
Sbjct: 271 YLITASSDTTARLWTMSTGEAIRVYTSHHKPVVCCALHDGAESAPS 316
>ref|NP_188442.1| WD-repeat protein, putative; protein id: At3g18140.1, supported by
cDNA: 35731. [Arabidopsis thaliana]
gi|9294069|dbj|BAB02026.1|
gb|AAD25820.1~gene_id:MRC8.12~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|21593059|gb|AAM65008.1| WD-repeat protein, putative
[Arabidopsis thaliana] gi|26983786|gb|AAN86145.1|
putative WD-repeat protein [Arabidopsis thaliana]
Length = 305
Score = 162 bits (409), Expect = 3e-39
Identities = 74/99 (74%), Positives = 83/99 (83%)
Frame = -2
Query: 529 NSYILKCLLSPEFCEPPRYLATASADHTVKIWNVDGFTLDKTLIGHQRWVWDCVFSVDGA 350
N +ILKCLLSP +YLATAS+D TVKIWNVDGF L+K L GHQRWVWDCVFSVDG
Sbjct: 211 NGHILKCLLSPA----NKYLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDCVFSVDGE 266
Query: 349 YLITASSDTTARLWSMSTGEDIKVYQGHHKATTCCALHD 233
+L+TASSD TARLWSM G+++KVYQGHHKAT CCALHD
Sbjct: 267 FLVTASSDMTARLWSMPAGKEVKVYQGHHKATVCCALHD 305
>ref|NP_179795.1| unknown protein; protein id: At2g22040.1 [Arabidopsis thaliana]
gi|25412077|pir||C84608 hypothetical protein At2g22040
[imported] - Arabidopsis thaliana
gi|4587592|gb|AAD25820.1| unknown protein [Arabidopsis
thaliana] gi|20198004|gb|AAM15346.1| unknown protein
[Arabidopsis thaliana]
Length = 312
Score = 144 bits (362), Expect = 8e-34
Identities = 67/97 (69%), Positives = 77/97 (79%)
Frame = -2
Query: 529 NSYILKCLLSPEFCEPPRYLATASADHTVKIWNVDGFTLDKTLIGHQRWVWDCVFSVDGA 350
NS+ILKCLLSP +YLATAS+D TVKIWN+DGF L+K L GH+RWVWDC FS+DG
Sbjct: 217 NSHILKCLLSPG----NKYLATASSDKTVKIWNLDGFKLEKVLTGHERWVWDCDFSMDGE 272
Query: 349 YLITASSDTTARLWSMSTGEDIKVYQGHHKATTCCAL 239
YL+TASSDTTARLWSM G++ VYQ H KAT CC L
Sbjct: 273 YLVTASSDTTARLWSMRAGKEEMVYQAHRKATVCCTL 309
>ref|NP_595682.1| pop3, a WD repeat protein [Schizosaccharomyces pombe]
gi|7492315|pir||T39922 pop3, a WD repeat protein -
fission yeast (Schizosaccharomyces pombe)
gi|3434986|dbj|BAA32427.1| Pop3 [Schizosaccharomyces
pombe] gi|6018741|emb|CAB57925.1| pop3, a WD repeat
protein [Schizosaccharomyces pombe]
Length = 314
Score = 120 bits (301), Expect = 1e-26
Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
Frame = -2
Query: 523 YILKCLLSPEFCEPPRYLATASADHTVKIWNVD--GFTLDKTLIGHQRWVWDCVFSVDGA 350
YI +C+LSP+ ++LAT SAD TV IW+ + F L++ L GHQRWVWDC FS D
Sbjct: 217 YITRCVLSPDV----KHLATCSADATVNIWSTEDMSFMLERRLQGHQRWVWDCAFSADST 272
Query: 349 YLITASSDTTARLWSMSTGEDIKVYQGHHKATTCCALHD 233
YL+TASSD ARLW +S+GE I+ Y GHHKA C AL+D
Sbjct: 273 YLVTASSDHVARLWELSSGETIRQYSGHHKAAVCVALND 311
Score = 33.1 bits (74), Expect = 2.1
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = -2
Query: 529 NSYILKCLLSPEFCEPPRYLATASADHTVKIWNVDGFTLDK--TLIGHQRWVWDCVFSVD 356
+S + + +SP+ ++LA A H V++++++ + T GH V F D
Sbjct: 40 DSQVNRLCISPD----KKFLAAAGNPH-VRLYDINTSSQMPLMTFEGHTNNVTAIAFHCD 94
Query: 355 GAYLITASSDTTARLWSM 302
G +L T+S D T ++W M
Sbjct: 95 GKWLATSSEDGTVKVWDM 112
Score = 31.6 bits (70), Expect = 6.1
Identities = 25/97 (25%), Positives = 43/97 (43%), Gaps = 6/97 (6%)
Frame = -2
Query: 484 PPRY---LATASADHTVKIWNVDGFTLDKTLIGHQRWVWDCVFSVDGAYLITASSDTTAR 314
PP++ L ++ DHT++ W +T+ V S D +L A+ + R
Sbjct: 6 PPQHSVLLVSSGYDHTIRFWEALSGICSRTIQHADSQVNRLCISPDKKFL-AAAGNPHVR 64
Query: 313 LWSMSTGED--IKVYQGHHKATTCCALH-DGAEPASS 212
L+ ++T + ++GH T A H DG A+S
Sbjct: 65 LYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKWLATS 101
>ref|NP_014392.1| Required for amino acid permease transport from the Golgi to the
cell surface; Lst8p [Saccharomyces cerevisiae]
gi|732202|sp|P41318|YNA6_YEAST Hypothetical 34.0 kDa
Trp-Asp repeats containing protein in SIS1-MRPL2
intergenic region gi|630172|pir||S45461 hypothetical
protein YNL006w - yeast (Saccharomyces cerevisiae)
gi|496716|emb|CAA54380.1| ORF N2005 [Saccharomyces
cerevisiae] gi|1301822|emb|CAA95865.1| ORF YNL006w
[Saccharomyces cerevisiae]
Length = 303
Score = 116 bits (290), Expect = 2e-25
Identities = 54/100 (54%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Frame = -2
Query: 529 NSYILKCLLSPEFCEPPRYLATASADHTVKIWNVDG-FTLDKTLIGHQRWVWDCVFSVDG 353
++YI + LLS + ++LAT SADHT ++W++D F L+ TL GHQRWVWDC FS D
Sbjct: 207 STYITRILLSSDV----KHLATCSADHTARVWSIDDDFKLETTLDGHQRWVWDCAFSADS 262
Query: 352 AYLITASSDTTARLWSMSTGEDIKVYQGHHKATTCCALHD 233
AYL+TASSD RLW +ST E ++ Y GHHK C AL+D
Sbjct: 263 AYLVTASSDHYVRLWDLSTREIVRQYGGHHKGAVCVALND 302
Score = 33.5 bits (75), Expect = 1.6
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -2
Query: 502 SPEFCEPPRYLATASADHTVKIWNVDGFTLDKTLIGHQRWVWDCVFSVDGAYLITASSDT 323
S F + R++ T+S D T+K+W+V ++ + H V + V + LI+ D
Sbjct: 80 SVSFQQDNRWMVTSSEDGTIKVWDVRSPSIPRN-YKHNAPVNEVVIHPNQGELISCDRDG 138
Query: 322 TARLWSMSTGE 290
R+W + +
Sbjct: 139 NIRIWDLGENQ 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,139,378
Number of Sequences: 1393205
Number of extensions: 8389914
Number of successful extensions: 26417
Number of sequences better than 10.0: 1875
Number of HSP's better than 10.0 without gapping: 18005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24758
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
