Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001711A_C01 KMC001711A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191900.1| putative chloroplast inner envelope protein; pr... 197 3e-50
dbj|BAB62076.1| APG1 [Arabidopsis thaliana] 197 3e-50
gb|AAM63077.1| putative chloroplast inner envelope protein [Arab... 192 6e-49
sp|P23525|IN37_SPIOL 37 KD INNER ENVELOPE MEMBRANE PROTEIN, CHLO... 191 1e-48
pir||T03230 membrane protein, 37K, precursor, chloroplast inner ... 186 6e-47
>ref|NP_191900.1| putative chloroplast inner envelope protein; protein id:
At3g63410.1, supported by cDNA: 19143., supported by
cDNA: gi_15005008 [Arabidopsis thaliana]
gi|11358638|pir||T49182 probable chloroplast inner
envelope protein - Arabidopsis thaliana
gi|7573324|emb|CAB87794.1| putative chloroplast inner
envelope protein [Arabidopsis thaliana]
Length = 338
Score = 197 bits (500), Expect = 3e-50
Identities = 92/107 (85%), Positives = 99/107 (91%), Gaps = 1/107 (0%)
Frame = -3
Query: 439 PKEEEYIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKQ 260
PKEEEYIEWF+ AGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK+
Sbjct: 232 PKEEEYIEWFKNAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKE 291
Query: 259 EDVKEPV-KPFVFFLRFLLGVLAASWFVLVPIYMWLKDQIVPKSQPI 122
EDV++PV PF F RFLLG LAA+WFVL+PIYMW+KDQIVPK QPI
Sbjct: 292 EDVEKPVNNPFSFLGRFLLGTLAAAWFVLIPIYMWIKDQIVPKDQPI 338
>dbj|BAB62076.1| APG1 [Arabidopsis thaliana]
Length = 338
Score = 197 bits (500), Expect = 3e-50
Identities = 92/107 (85%), Positives = 99/107 (91%), Gaps = 1/107 (0%)
Frame = -3
Query: 439 PKEEEYIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKQ 260
PKEEEYIEWF+ AGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK+
Sbjct: 232 PKEEEYIEWFKNAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKE 291
Query: 259 EDVKEPV-KPFVFFLRFLLGVLAASWFVLVPIYMWLKDQIVPKSQPI 122
EDV++PV PF F RFLLG LAA+WFVL+PIYMW+KDQIVPK QPI
Sbjct: 292 EDVEKPVNNPFSFLGRFLLGTLAAAWFVLIPIYMWIKDQIVPKDQPI 338
>gb|AAM63077.1| putative chloroplast inner envelope protein [Arabidopsis thaliana]
Length = 338
Score = 192 bits (489), Expect = 6e-49
Identities = 91/107 (85%), Positives = 98/107 (91%), Gaps = 1/107 (0%)
Frame = -3
Query: 439 PKEEEYIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKQ 260
PKEEEYIEWF+ AGFKDVQLKRIGPKWYRGVRRHGLIMG SVTGVKPASGDSPLQLGPK+
Sbjct: 232 PKEEEYIEWFKNAGFKDVQLKRIGPKWYRGVRRHGLIMGYSVTGVKPASGDSPLQLGPKE 291
Query: 259 EDVKEPV-KPFVFFLRFLLGVLAASWFVLVPIYMWLKDQIVPKSQPI 122
EDV++PV PF F RFLLG LAA+WFVL+PIYMW+KDQIVPK QPI
Sbjct: 292 EDVEKPVNNPFSFLGRFLLGTLAAAWFVLIPIYMWIKDQIVPKDQPI 338
>sp|P23525|IN37_SPIOL 37 KD INNER ENVELOPE MEMBRANE PROTEIN, CHLOROPLAST PRECURSOR (E37)
gi|99543|pir||S14409 membrane protein, 37K, precursor,
chloroplast inner envelope - spinach
gi|21228|emb|CAA40283.1| 37 kD inner envelope membrane
polypeptide [Spinacia oleracea]
Length = 344
Score = 191 bits (486), Expect = 1e-48
Identities = 87/106 (82%), Positives = 97/106 (91%)
Frame = -3
Query: 439 PKEEEYIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKQ 260
PKEEEYIEWF+KAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK
Sbjct: 239 PKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKV 298
Query: 259 EDVKEPVKPFVFFLRFLLGVLAASWFVLVPIYMWLKDQIVPKSQPI 122
EDV++PV P VF RFLLG LA++++VLVPIYMW+KD+I PK P+
Sbjct: 299 EDVQKPVHPLVFLYRFLLGALASTYYVLVPIYMWIKDKIFPKGMPL 344
>pir||T03230 membrane protein, 37K, precursor, chloroplast inner envelope -
common tobacco gi|1419090|emb|CAA64422.1| 37kDa
chloroplast inner envelope membrane polypeptide
precursor [Nicotiana tabacum]
Length = 335
Score = 186 bits (472), Expect = 6e-47
Identities = 85/106 (80%), Positives = 94/106 (88%)
Frame = -3
Query: 439 PKEEEYIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKQ 260
PKEEEYIEWF+KAGF V+LKRIGPKWYRGVRRHGLIMGCSVTGVKP G+SPLQLGPK
Sbjct: 230 PKEEEYIEWFKKAGFAQVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPYFGESPLQLGPKV 289
Query: 259 EDVKEPVKPFVFFLRFLLGVLAASWFVLVPIYMWLKDQIVPKSQPI 122
EDV +PV PF F +RFLLG+ AA+++VLVPIYMWLKDQI PK QPI
Sbjct: 290 EDVSKPVNPFAFLVRFLLGITAATYYVLVPIYMWLKDQITPKGQPI 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,976,570
Number of Sequences: 1393205
Number of extensions: 8514769
Number of successful extensions: 21589
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21570
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
