Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001710A_C01 KMC001710A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM20144.1| unknown protein [Arabidopsis thaliana] 131 6e-30
ref|NP_194164.1| putative protein; protein id: At4g24330.1, supp... 131 6e-30
gb|AAM66125.1| unknown [Arabidopsis thaliana] 131 6e-30
dbj|BAA97015.1| gene_id:K9P8.8~pir||T09896~strong similarity to ... 127 1e-28
ref|NP_568716.1| putative protein; protein id: At5g49945.1, supp... 127 1e-28
>gb|AAM20144.1| unknown protein [Arabidopsis thaliana]
Length = 478
Score = 131 bits (330), Expect = 6e-30
Identities = 66/86 (76%), Positives = 79/86 (91%)
Frame = -2
Query: 603 DLIGRYKLSFQARSKTETARQKAAQEAQKELRYAQQEAMQRKKAERKKMIEEAEAKLGAE 424
DLIGRYKLS QAR+KT+ ARQKAAQEA KEL +QEA+QRKKAE+KK++EEA+AKL +E
Sbjct: 392 DLIGRYKLSSQARNKTDGARQKAAQEAYKELENVRQEALQRKKAEKKKILEEAQAKLSSE 451
Query: 423 AIRKKEAKERARQMKKSMPRMKISRG 346
A+RKKEAKERARQMKKSMP++K+SRG
Sbjct: 452 ALRKKEAKERARQMKKSMPKVKMSRG 477
>ref|NP_194164.1| putative protein; protein id: At4g24330.1, supported by cDNA:
8254., supported by cDNA: gi_20465625 [Arabidopsis
thaliana] gi|7452466|pir||T09896 hypothetical protein
T22A6.160 - Arabidopsis thaliana
gi|5051775|emb|CAB45068.1| putative protein [Arabidopsis
thaliana] gi|7269283|emb|CAB79343.1| putative protein
[Arabidopsis thaliana]
Length = 478
Score = 131 bits (330), Expect = 6e-30
Identities = 66/86 (76%), Positives = 79/86 (91%)
Frame = -2
Query: 603 DLIGRYKLSFQARSKTETARQKAAQEAQKELRYAQQEAMQRKKAERKKMIEEAEAKLGAE 424
DLIGRYKLS QAR+KT+ ARQKAAQEA KEL +QEA+QRKKAE+KK++EEA+AKL +E
Sbjct: 392 DLIGRYKLSSQARNKTDGARQKAAQEAYKELENVRQEALQRKKAEKKKILEEAQAKLSSE 451
Query: 423 AIRKKEAKERARQMKKSMPRMKISRG 346
A+RKKEAKERARQMKKSMP++K+SRG
Sbjct: 452 ALRKKEAKERARQMKKSMPKVKMSRG 477
>gb|AAM66125.1| unknown [Arabidopsis thaliana]
Length = 478
Score = 131 bits (330), Expect = 6e-30
Identities = 66/86 (76%), Positives = 79/86 (91%)
Frame = -2
Query: 603 DLIGRYKLSFQARSKTETARQKAAQEAQKELRYAQQEAMQRKKAERKKMIEEAEAKLGAE 424
DLIGRYKLS QAR+KT+ ARQKAAQEA KEL +QEA+QRKKAE+KK++EEA+AKL +E
Sbjct: 392 DLIGRYKLSSQARNKTDGARQKAAQEAYKELENVRQEALQRKKAEKKKILEEAQAKLSSE 451
Query: 423 AIRKKEAKERARQMKKSMPRMKISRG 346
A+RKKEAKERARQMKKSMP++K+SRG
Sbjct: 452 ALRKKEAKERARQMKKSMPKVKMSRG 477
>dbj|BAA97015.1| gene_id:K9P8.8~pir||T09896~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 684
Score = 127 bits (318), Expect = 1e-28
Identities = 62/85 (72%), Positives = 78/85 (90%)
Frame = -2
Query: 603 DLIGRYKLSFQARSKTETARQKAAQEAQKELRYAQQEAMQRKKAERKKMIEEAEAKLGAE 424
DL+GRY+LS QAR+KTE+ RQKAA+EA KEL A+QEA+Q+KKAE+KKM+EEAEAK+ AE
Sbjct: 598 DLVGRYRLSSQARNKTESGRQKAAEEAYKELHNARQEALQKKKAEKKKMMEEAEAKMSAE 657
Query: 423 AIRKKEAKERARQMKKSMPRMKISR 349
IRKKEAKERARQ+KK++P+MK+SR
Sbjct: 658 VIRKKEAKERARQVKKAVPKMKMSR 682
>ref|NP_568716.1| putative protein; protein id: At5g49945.1, supported by cDNA:
gi_14334595 [Arabidopsis thaliana]
gi|14334596|gb|AAK59476.1| unknown protein [Arabidopsis
thaliana] gi|24030469|gb|AAN41386.1| unknown protein
[Arabidopsis thaliana]
Length = 480
Score = 127 bits (318), Expect = 1e-28
Identities = 62/85 (72%), Positives = 78/85 (90%)
Frame = -2
Query: 603 DLIGRYKLSFQARSKTETARQKAAQEAQKELRYAQQEAMQRKKAERKKMIEEAEAKLGAE 424
DL+GRY+LS QAR+KTE+ RQKAA+EA KEL A+QEA+Q+KKAE+KKM+EEAEAK+ AE
Sbjct: 394 DLVGRYRLSSQARNKTESGRQKAAEEAYKELHNARQEALQKKKAEKKKMMEEAEAKMSAE 453
Query: 423 AIRKKEAKERARQMKKSMPRMKISR 349
IRKKEAKERARQ+KK++P+MK+SR
Sbjct: 454 VIRKKEAKERARQVKKAVPKMKMSR 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,872,753
Number of Sequences: 1393205
Number of extensions: 9584425
Number of successful extensions: 40731
Number of sequences better than 10.0: 741
Number of HSP's better than 10.0 without gapping: 33997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39088
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
