KMC001707A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001707A_C01 KMC001707A_c01
AAAATGCCATAAATTTATATATGAGCATGTCTTACAATGTAAATTTTATGGGTCTGTCAC
TGCACATGAGTCTCCAACGTGAGAGGATCTGACCCCGTTTTAGTCTCAGATTAATGAGTT
AAAGCCTAGATAATTCATCTACTACCCTCTTCTCTAAATGTGAACAAGTTTTGGGAACAT
GATGAATTCTGCTTCTATCTTCTGTTTGGGCATTTGCATTCATCCAGGTATTGCTGGATA
CACGTACGATATAAAACCCCAAACGGGCCAACACCATAGAAATGACTTTTATCCCATGCA
TTTTGTCTTGAAAGACCATTACAGCTAATATAGGAACAATATGCTGACCCAAAACGCTTA
TAGCATGGGAGAAGAGGGAAGAGACCTCGAAAACCAGTCCCGTACAACCGAGAGTAACGA
GTTGCGAAATTATGGCTGTAAAAGCAAGATTCAATATATAGGCAGCTTTACCTGTCTCAT
ACCCCTCAATTTCTTTCTTCAAACCTTTCCA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001707A_C01 KMC001707A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193556.1| putative protein; protein id: At4g18220.1 [Arab... 111 4e-24
pir||T04923 hypothetical protein T9A21.60 - Arabidopsis thaliana... 107 8e-23
ref|NP_193555.2| putative protein; protein id: At4g18210.1, supp... 107 8e-23
ref|NP_193554.1| putative protein; protein id: At4g18200.1 [Arab... 91 8e-18
gb|AAL69512.1| unknown protein [Arabidopsis thaliana] gi|2046549... 91 8e-18
>ref|NP_193556.1| putative protein; protein id: At4g18220.1 [Arabidopsis thaliana]
gi|7487850|pir||T04924 hypothetical protein T9A21.70 -
Arabidopsis thaliana gi|2832696|emb|CAA16794.1| putative
protein [Arabidopsis thaliana]
gi|7268615|emb|CAB78824.1| putative protein [Arabidopsis
thaliana]
Length = 344
Score = 111 bits (278), Expect = 4e-24
Identities = 51/86 (59%), Positives = 70/86 (81%)
Frame = -1
Query: 511 WKGLKKEIEGYETGKAAYILNLAFTAIISQLVTLGCTGLVFEVSSLFSHAISVLGQHIVP 332
WK L E+E Y+ GK +Y++NL +TA+ Q+ ++GCTGL+FE+SSLFS+AIS LG +VP
Sbjct: 220 WKTLSSEMENYKLGKVSYVMNLVWTAVTWQVFSIGCTGLIFELSSLFSNAISALGLPVVP 279
Query: 331 ILAVMVFQDKMHGIKVISMVLARLGF 254
ILAV++F DKM+G+KVISM+LA GF
Sbjct: 280 ILAVIIFHDKMNGLKVISMILAIWGF 305
>pir||T04923 hypothetical protein T9A21.60 - Arabidopsis thaliana
gi|2832695|emb|CAA16793.1| putative protein [Arabidopsis
thaliana] gi|7268614|emb|CAB78823.1| putative protein
[Arabidopsis thaliana]
Length = 348
Score = 107 bits (267), Expect = 8e-23
Identities = 51/86 (59%), Positives = 70/86 (81%)
Frame = -1
Query: 511 WKGLKKEIEGYETGKAAYILNLAFTAIISQLVTLGCTGLVFEVSSLFSHAISVLGQHIVP 332
WK L E++ Y+ GK +YI+NL +TA+ Q+ ++G TGL+FE+SSLFS+AISVLG +VP
Sbjct: 224 WKTLSSEMDNYKHGKVSYIMNLVWTAVTWQVFSIGGTGLIFELSSLFSNAISVLGLPVVP 283
Query: 331 ILAVMVFQDKMHGIKVISMVLARLGF 254
ILAV++F DKM+G+KVISM+LA GF
Sbjct: 284 ILAVIIFHDKMNGLKVISMILAIWGF 309
>ref|NP_193555.2| putative protein; protein id: At4g18210.1, supported by cDNA:
gi_13877726 [Arabidopsis thaliana]
gi|13877727|gb|AAK43941.1|AF370622_1 putative protein
[Arabidopsis thaliana]
Length = 149
Score = 107 bits (267), Expect = 8e-23
Identities = 51/86 (59%), Positives = 70/86 (81%)
Frame = -1
Query: 511 WKGLKKEIEGYETGKAAYILNLAFTAIISQLVTLGCTGLVFEVSSLFSHAISVLGQHIVP 332
WK L E++ Y+ GK +YI+NL +TA+ Q+ ++G TGL+FE+SSLFS+AISVLG +VP
Sbjct: 25 WKTLSSEMDNYKHGKVSYIMNLVWTAVTWQVFSIGGTGLIFELSSLFSNAISVLGLPVVP 84
Query: 331 ILAVMVFQDKMHGIKVISMVLARLGF 254
ILAV++F DKM+G+KVISM+LA GF
Sbjct: 85 ILAVIIFHDKMNGLKVISMILAIWGF 110
>ref|NP_193554.1| putative protein; protein id: At4g18200.1 [Arabidopsis thaliana]
gi|7487848|pir||T04922 hypothetical protein T9A21.50 -
Arabidopsis thaliana gi|2832694|emb|CAA16792.1| putative
protein [Arabidopsis thaliana] gi|7268613|emb|CAB78822.1|
putative protein [Arabidopsis thaliana]
Length = 1128
Score = 90.9 bits (224), Expect = 8e-18
Identities = 43/86 (50%), Positives = 61/86 (70%)
Frame = -1
Query: 511 WKGLKKEIEGYETGKAAYILNLAFTAIISQLVTLGCTGLVFEVSSLFSHAISVLGQHIVP 332
W+ L E+ Y+ GK +YIL LA AI Q+ T+GC GL+FE SS+FS++I+ +G IVP
Sbjct: 1014 WRTLPSEMRNYKLGKVSYILTLASAAIFWQVYTVGCVGLIFESSSVFSNSITAVGLPIVP 1073
Query: 331 ILAVMVFQDKMHGIKVISMVLARLGF 254
++AV+VF DKM K+ S++LA GF
Sbjct: 1074 VVAVIVFHDKMDASKIFSIILAIWGF 1099
Score = 88.2 bits (217), Expect = 5e-17
Identities = 42/86 (48%), Positives = 61/86 (70%)
Frame = -1
Query: 511 WKGLKKEIEGYETGKAAYILNLAFTAIISQLVTLGCTGLVFEVSSLFSHAISVLGQHIVP 332
WK L E+E Y+ GK Y++ LA AI Q+ T+G GL+FE SS+FS++I+ +G IVP
Sbjct: 278 WKTLTSEMENYKLGKVPYVMTLASIAISWQVYTIGVVGLIFESSSVFSNSITAVGLPIVP 337
Query: 331 ILAVMVFQDKMHGIKVISMVLARLGF 254
++AV+VF DKM+ K+ S++LA GF
Sbjct: 338 VVAVIVFHDKMNASKIFSIILAIWGF 363
Score = 85.1 bits (209), Expect = 4e-16
Identities = 41/86 (47%), Positives = 59/86 (67%)
Frame = -1
Query: 511 WKGLKKEIEGYETGKAAYILNLAFTAIISQLVTLGCTGLVFEVSSLFSHAISVLGQHIVP 332
W+ L E+ Y+ GK +Y+L LA AI Q+ TLG GL+FE SS+FS++I+ +G IVP
Sbjct: 639 WETLPSEMRNYKLGKVSYVLTLASAAISWQVYTLGLVGLIFESSSVFSNSITAVGLPIVP 698
Query: 331 ILAVMVFQDKMHGIKVISMVLARLGF 254
+ AV+VF D+M K+ S++LA GF
Sbjct: 699 VAAVIVFHDRMDASKIFSIILAICGF 724
>gb|AAL69512.1| unknown protein [Arabidopsis thaliana] gi|20465497|gb|AAM20208.1|
putative protein [Arabidopsis thaliana]
Length = 377
Score = 90.9 bits (224), Expect = 8e-18
Identities = 43/86 (50%), Positives = 61/86 (70%)
Frame = -1
Query: 511 WKGLKKEIEGYETGKAAYILNLAFTAIISQLVTLGCTGLVFEVSSLFSHAISVLGQHIVP 332
W+ L E+ Y+ GK +YIL LA AI Q+ T+GC GL+FE SS+FS++I+ +G IVP
Sbjct: 263 WRTLPSEMRNYKLGKVSYILTLASAAIFWQVYTVGCVGLIFESSSVFSNSITAVGLPIVP 322
Query: 331 ILAVMVFQDKMHGIKVISMVLARLGF 254
++AV+VF DKM K+ S++LA GF
Sbjct: 323 VVAVIVFHDKMDASKIFSIILAIWGF 348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,089,272
Number of Sequences: 1393205
Number of extensions: 9489071
Number of successful extensions: 23263
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 22699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23260
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GENf010g10 |
BP058784 |
1 |
377 |
2 |
GNf053d08 |
BP071313 |
1 |
414 |
3 |
GNf087f07 |
BP073802 |
1 |
422 |
4 |
GNf058b02 |
BP071659 |
1 |
414 |
5 |
GENf020h01 |
BP059230 |
1 |
370 |
6 |
GENf091f08 |
BP062178 |
3 |
535 |
7 |
GNf009f03 |
BP068028 |
6 |
286 |
8 |
GENf026d06 |
BP059436 |
7 |
477 |
9 |
GENf023d11 |
BP059327 |
8 |
385 |
|
Lotus japonicus
Kazusa DNA Research Institute