Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001706A_C03 KMC001706A_c03
(708 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22518|RSP4_SOYBN 40S RIBOSOMAL PROTEIN SA (P40) gi|7441124|p... 126 2e-29
sp|O65751|RSP4_CICAR 40S RIBOSOMAL PROTEIN SA (P40) gi|3204099|e... 127 2e-28
gb|AAK92638.1|AC079633_18 Putative 40S Ribosomal protein [Oryza ... 91 2e-17
sp|Q9ZSR8|RSP4_BRANA 40S ribosomal protein SA (p40) (Laminin rec... 89 8e-17
sp|O80377|RSP4_DAUCA 40S ribosomal protein SA (p40) gi|7441130|p... 84 2e-15
>sp|O22518|RSP4_SOYBN 40S RIBOSOMAL PROTEIN SA (P40) gi|7441124|pir||T05733
ribosome-associated protein p40 - soybean
gi|2444420|gb|AAB82659.1| ribosome-associated protein
p40 [Glycine max]
Length = 310
Score = 126 bits (316), Expect(2) = 2e-29
Identities = 59/90 (65%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Frame = -3
Query: 706 RMVLQMRSTIRPGQKWDVMVDLFFYRDPEETKKEEEEEAPVQDFAISGYDAAGMDSFPTD 527
RMVLQMR TIRPG KWDVMVDLFFYR+PEE K++EEEEAP D+AI+ ++A + D
Sbjct: 187 RMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAG---AIAAD 243
Query: 526 GQWPSALEQPWSEEVPQPISAVPG-NWAAP 440
GQWP ++Q WS+ VPQPI AVPG NW AP
Sbjct: 244 GQWPGTIDQSWSDAVPQPIPAVPGVNWGAP 273
Score = 25.4 bits (54), Expect(2) = 2e-29
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 441 PNPAGG-WGETVPAPQSAVPATETIPRRSI*TSSPPLRWD 325
P AGG WGE VP PQ +P +P I T P WD
Sbjct: 277 PAAAGGDWGEAVPPPQQ-IP----VPPSGIDTVQPS-GWD 310
>sp|O65751|RSP4_CICAR 40S RIBOSOMAL PROTEIN SA (P40) gi|3204099|emb|CAA07226.1|
ribosome-associated protein p40 [Cicer arietinum]
Length = 300
Score = 127 bits (318), Expect = 2e-28
Identities = 58/91 (63%), Positives = 73/91 (79%), Gaps = 1/91 (1%)
Frame = -3
Query: 706 RMVLQMRSTIRPGQKWDVMVDLFFYRDPEETKKEEEEEAPVQDFAISGYDAAGMDSFPTD 527
RMVLQMR TIRPG KWDVMVDLFFYR+PEE K+ EE+E D+AI+ ++ + + P+D
Sbjct: 183 RMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFN---VSAIPSD 239
Query: 526 GQWPSALEQPWSEEVPQPISAVPG-NWAAPE 437
GQWP+A++QPW++ VPQPI AVP NWAAPE
Sbjct: 240 GQWPAAIDQPWNDAVPQPIPAVPAVNWAAPE 270
>gb|AAK92638.1|AC079633_18 Putative 40S Ribosomal protein [Oryza sativa]
Length = 305
Score = 90.9 bits (224), Expect = 2e-17
Identities = 50/92 (54%), Positives = 58/92 (62%), Gaps = 1/92 (1%)
Frame = -3
Query: 706 RMVLQMRSTIRPGQKWDVMVDLFFYRDPEETKKEEEEEAPVQDFAISGYDAAGMDSFPTD 527
RMVLQMR TI PG KWDVMVDLFFYRDPEE KE+EEEAP QDF A + +
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDLFFYRDPEEA-KEQEEEAPAQDF-------AAITDYTAP 235
Query: 526 GQWPSALEQPWSEEVPQPISAVPGNW-AAPEP 434
QW + W+ +V P +A G+W AAP P
Sbjct: 236 EQWSA---DQWTSDVAAPPAATVGDWGAAPAP 264
>sp|Q9ZSR8|RSP4_BRANA 40S ribosomal protein SA (p40) (Laminin receptor-like protein)
gi|3769681|gb|AAC97937.1| laminin receptor-like protein
[Brassica napus]
Length = 292
Score = 88.6 bits (218), Expect = 8e-17
Identities = 52/97 (53%), Positives = 61/97 (62%), Gaps = 8/97 (8%)
Frame = -3
Query: 706 RMVLQMRSTIRPGQKWDVMVDLFFYRDPEETKKEEEEE-APVQDFAISGYDAAGMDSFPT 530
RMVLQMR TIRP QKWDVMVDLFFYR+PEETK E+E+E AP +F + + G D
Sbjct: 181 RMVLQMRGTIRPAQKWDVMVDLFFYREPEETKPEDEDEVAPQAEFGLPAPEYGGGD---- 236
Query: 529 DGQWPSAL--EQPWSEEVPQPISAVP--GNW---AAP 440
QW +A + W E PISA P G+W AAP
Sbjct: 237 --QWTTAAIPDAAWPGEAQAPISAAPAAGSWNDSAAP 271
>sp|O80377|RSP4_DAUCA 40S ribosomal protein SA (p40) gi|7441130|pir||T14281 P40-like
ribosomal protein - carrot gi|3551245|dbj|BAA32821.1|
P40-like protein [Daucus carota]
Length = 297
Score = 84.0 bits (206), Expect = 2e-15
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = -3
Query: 706 RMVLQMRSTIRPGQKWDVMVDLFFYRDPEETKKEEEEEAPVQDFAISGYDAAGMDSFPTD 527
RMVLQMR I G KW+VMVDLFFYR+PEETK +EEE+ PV D+ ++ Y AA P
Sbjct: 180 RMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDY-VADYAAA-----PIG 233
Query: 526 G--QWPSALEQPWSEEVPQPI-SAVP-GNWAAPEPCWRLG*DCSSS 401
G QW + + W +V QP SAVP G W P G D +++
Sbjct: 234 GADQWNAIPDAQWGGDVVQPANSAVPAGTWTDAGPIAGDGWDAAAA 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,678,891
Number of Sequences: 1393205
Number of extensions: 15642716
Number of successful extensions: 55026
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 51483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54882
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
