Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001699A_C01 KMC001699A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01899.1| gene_id:MFD22.1~unknown protein [Arabidopsis tha... 76 5e-13
ref|NP_683417.1| hypothetical protein; protein id: At1g51355.1 [... 71 2e-11
ref|NP_188726.1| hypothetical protein; protein id: At3g20900.1 [... 47 2e-04
ref|NP_172539.1| unknown protein; protein id: At1g10690.1 [Arabi... 47 3e-04
gb|AAM63698.1| unknown [Arabidopsis thaliana] 45 8e-04
>dbj|BAB01899.1| gene_id:MFD22.1~unknown protein [Arabidopsis thaliana]
Length = 135
Score = 75.9 bits (185), Expect = 5e-13
Identities = 33/54 (61%), Positives = 39/54 (72%)
Frame = -1
Query: 651 CSTPKGQKFRIPEISTCPPAPKKPRVLSNCSLRRSPLSFFTPPDLELFFFSLRD 490
C TPK +K RIPE+ TCPPAPKK RV NC LRR + FF PP++ELFF + D
Sbjct: 81 CCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFFVNAHD 134
>ref|NP_683417.1| hypothetical protein; protein id: At1g51355.1 [Arabidopsis
thaliana]
Length = 116
Score = 70.9 bits (172), Expect = 2e-11
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = -1
Query: 660 SACCSTPKGQKFRIPEISTCPPAPKKPRVLSNCSLRRSPLSFFTPPDLELFF 505
S CC TP +K RIPE+ TCPPAPKK +V NC+LRR ++FF PPD+ELFF
Sbjct: 58 SGCC-TP--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFF 106
>ref|NP_188726.1| hypothetical protein; protein id: At3g20900.1 [Arabidopsis
thaliana]
Length = 68
Score = 47.4 bits (111), Expect = 2e-04
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2
Query: 554 RKEQFESTLGFFGAGGHVEISGILNF*PFGVEQ 652
R QF TL FFGAGGHV ISGIL+F FGV+Q
Sbjct: 20 RNTQFFETLCFFGAGGHVSISGILDFLAFGVQQ 52
>ref|NP_172539.1| unknown protein; protein id: At1g10690.1 [Arabidopsis thaliana]
gi|25372981|pir||C86240 hypothetical protein [imported]
- Arabidopsis thaliana
gi|4874279|gb|AAD31344.1|AC007354_17 ESTs gb|T75618 and
gb|AA404816 come from this gene. [Arabidopsis thaliana]
Length = 110
Score = 46.6 bits (109), Expect = 3e-04
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = -1
Query: 681 VIDGPNSSACCSTPKGQKFRIPEISTCPPAPKKPRVLSNCSLRRSPLSFFTPPDLELFF 505
V + C +TP RIP + CP APKK + CS +F+PPDLE F
Sbjct: 46 VTETEEQDQCPTTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104
>gb|AAM63698.1| unknown [Arabidopsis thaliana]
Length = 112
Score = 45.4 bits (106), Expect = 8e-04
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -1
Query: 654 CCSTPKGQKFRIPEISTCPPAPKKPRVLSNCSLRRSPL--SFFTPP-DLELFFFSLR 493
C +TP ++ +IPE+ CPPAP+K R C RS + FFTPP DLE F R
Sbjct: 59 CSTTPTAKETKIPELLECPPAPRKRRPALKC---RSNVVREFFTPPSDLETVFLCRR 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,963,534
Number of Sequences: 1393205
Number of extensions: 11992563
Number of successful extensions: 29274
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29232
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
