Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001694A_C02 KMC001694A_c02
(762 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P43395|ATP2_ACTCH ATP synthase beta chain, mitochondrial (PKI... 270 2e-71
sp|P19023|ATP2_MAIZE ATP synthase beta chain, mitochondrial prec... 267 1e-70
gb|AAD03394.1| ATPase beta subunit [Nicotiana sylvestris] 266 2e-70
sp|P29685|ATP2_HEVBR ATP synthase beta chain, mitochondrial prec... 266 2e-70
dbj|BAB92708.1| putative ATP synthase beta chain, mitochondrial ... 266 2e-70
>sp|P43395|ATP2_ACTCH ATP synthase beta chain, mitochondrial (PKIWI505)
gi|1085656|pir||S48039 H+-transporting two-sector ATPase
(EC 3.6.3.14) beta chain, mitochondrial - kiwi fruit
(fragment) gi|450243|gb|AAA53073.1| 'beta subunit of ATP
synthase'
Length = 173
Score = 270 bits (689), Expect = 2e-71
Identities = 137/142 (96%), Positives = 140/142 (98%)
Frame = -2
Query: 761 RQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDEL 582
RQISELGIYPAVDPLDSTSRMLSP ILGE+HY TARGVQKVLQNYKNLQDIIAILGMDEL
Sbjct: 31 RQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDEL 90
Query: 581 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENITSFQGVLDGKYDDLPEQS 402
SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKE+ITSFQGVLDGK+DDLPEQS
Sbjct: 91 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESITSFQGVLDGKFDDLPEQS 150
Query: 401 FYMVGGIEEVIAKAEKISKESA 336
FYMVGGIEEVIAKAEKISKESA
Sbjct: 151 FYMVGGIEEVIAKAEKISKESA 172
>sp|P19023|ATP2_MAIZE ATP synthase beta chain, mitochondrial precursor
gi|100882|pir||S11491 H+-transporting two-sector ATPase
(EC 3.6.3.14) beta chain, mitochondrial - maize
gi|22173|emb|CAA38140.1| ATPase F1 subunit protein [Zea
mays] gi|897618|gb|AAA70268.1| mitochondrial F-1-ATPase
subunit 2 [Zea mays]
Length = 553
Score = 267 bits (683), Expect = 1e-70
Identities = 134/143 (93%), Positives = 140/143 (97%)
Frame = -2
Query: 761 RQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDEL 582
RQISELGIYPAVDPLDSTSRMLSP +LGEDHY TARGVQKVLQNYKNLQDIIAILGMDEL
Sbjct: 411 RQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDEL 470
Query: 581 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENITSFQGVLDGKYDDLPEQS 402
SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYV+LKE++ SFQGVLDGKYDDLPEQS
Sbjct: 471 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVKSFQGVLDGKYDDLPEQS 530
Query: 401 FYMVGGIEEVIAKAEKISKESAT 333
FYMVGGIEEVIAKAEKI+KESA+
Sbjct: 531 FYMVGGIEEVIAKAEKIAKESAS 553
>gb|AAD03394.1| ATPase beta subunit [Nicotiana sylvestris]
Length = 553
Score = 266 bits (681), Expect = 2e-70
Identities = 136/143 (95%), Positives = 139/143 (97%)
Frame = -2
Query: 761 RQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDEL 582
RQISELGIYPAVDPLDSTSRMLSP ILGEDHY TARGVQKVLQNYKNLQDIIAILGMDEL
Sbjct: 411 RQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDEL 470
Query: 581 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENITSFQGVLDGKYDDLPEQS 402
SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKE+I SFQGVLDGKYDDL EQS
Sbjct: 471 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESIQSFQGVLDGKYDDLSEQS 530
Query: 401 FYMVGGIEEVIAKAEKISKESAT 333
FYMVGGIEEVIAKAEKI+KESA+
Sbjct: 531 FYMVGGIEEVIAKAEKIAKESAS 553
>sp|P29685|ATP2_HEVBR ATP synthase beta chain, mitochondrial precursor
gi|82027|pir||S20504 H+-transporting two-sector ATPase
(EC 3.6.3.14) beta chain, mitochondrial - Para rubber
tree gi|18831|emb|CAA41401.1| mitochondrial ATP synthase
beta-subunit [Hevea brasiliensis]
Length = 562
Score = 266 bits (681), Expect = 2e-70
Identities = 134/143 (93%), Positives = 141/143 (97%)
Frame = -2
Query: 761 RQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDEL 582
RQISELGIYPAVDPLDSTSRMLSP ILGE+HY TARGVQKVLQNYKNLQDIIAILGMDEL
Sbjct: 420 RQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDEL 479
Query: 581 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENITSFQGVLDGKYDDLPEQS 402
SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYV+LKE+ITSFQGVLDGKYDDLPEQS
Sbjct: 480 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESITSFQGVLDGKYDDLPEQS 539
Query: 401 FYMVGGIEEVIAKAEKISKESAT 333
FYMVGGI+EVIAKA+KI+KESA+
Sbjct: 540 FYMVGGIDEVIAKADKIAKESAS 562
>dbj|BAB92708.1| putative ATP synthase beta chain, mitochondrial precursor [Oryza
sativa (japonica cultivar-group)]
Length = 555
Score = 266 bits (680), Expect = 2e-70
Identities = 133/143 (93%), Positives = 140/143 (97%)
Frame = -2
Query: 761 RQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDEL 582
RQISELGIYPAVDPLDSTSRMLSP +LGEDHY TARGVQKVLQNYKNLQDIIAILGMDEL
Sbjct: 413 RQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDEL 472
Query: 581 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENITSFQGVLDGKYDDLPEQS 402
SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYV+LKE++ SFQGVLDGKYDDLPEQS
Sbjct: 473 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVQSFQGVLDGKYDDLPEQS 532
Query: 401 FYMVGGIEEVIAKAEKISKESAT 333
FYMVGGI+EVIAKAEKI+KESA+
Sbjct: 533 FYMVGGIDEVIAKAEKIAKESAS 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 681,860,198
Number of Sequences: 1393205
Number of extensions: 15645352
Number of successful extensions: 45012
Number of sequences better than 10.0: 1968
Number of HSP's better than 10.0 without gapping: 43614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44964
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
