Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001692A_C02 KMC001692A_c02
(682 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P51132|UCR2_TOBAC Ubiquinol-cytochrome C reductase iron-sulfu... 206 1e-55
ref|NP_568288.1| ubiquinol--cytochrome-c reductase - like protei... 206 1e-55
sp|P49729|UCR1_TOBAC Ubiquinol-cytochrome C reductase iron-sulfu... 206 1e-55
pir||T48590 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) Riesk... 206 1e-55
sp|P51134|UCR4_TOBAC Ubiquinol-cytochrome C reductase iron-sulfu... 206 1e-55
>sp|P51132|UCR2_TOBAC Ubiquinol-cytochrome C reductase iron-sulfur subunit 2,
mitochondrial precursor (Rieske iron-sulfur protein 2)
(RISP2) gi|7430472|pir||T02027 ubiquinol-cytochrome-c
reductase (EC 1.10.2.2) Rieske iron-sulfur protein
precursor - common tobacco gi|530052|gb|AAA20831.1|
Rieske iron-sulfur protein
Length = 272
Score = 206 bits (524), Expect(2) = 1e-55
Identities = 93/103 (90%), Positives = 98/103 (94%)
Frame = -1
Query: 682 TVTVKWRGKPVFIRRRTEDDINLANSVDVGSLRDPQQDSDRVKNPEWLVVIGVCTHLGCI 503
TVTVKWRGKPVFIRRRTEDDINLANSVD+GSLRDPQQD++RVK+PEWLVVIGVCTHLGCI
Sbjct: 162 TVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCI 221
Query: 502 PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEGSHLHFL 374
PLPNAGD+GGWFCPCHGSHYDISGRIRKGPAPYNLE FL
Sbjct: 222 PLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFL 264
Score = 32.7 bits (73), Expect(2) = 1e-55
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -2
Query: 393 VPTYTFLEENKLLIG 349
VPTY+FLEENKLLIG
Sbjct: 258 VPTYSFLEENKLLIG 272
>ref|NP_568288.1| ubiquinol--cytochrome-c reductase - like protein; protein id:
At5g13430.1, supported by cDNA: 1482., supported by
cDNA: gi_14030644, supported by cDNA: gi_17978904
[Arabidopsis thaliana]
gi|14030645|gb|AAK52997.1|AF375413_1 AT5g13430/T22N19_80
[Arabidopsis thaliana] gi|17978905|gb|AAL47422.1|
AT5g13430/T22N19_80 [Arabidopsis thaliana]
Length = 272
Score = 206 bits (524), Expect(2) = 1e-55
Identities = 94/103 (91%), Positives = 96/103 (92%)
Frame = -1
Query: 682 TVTVKWRGKPVFIRRRTEDDINLANSVDVGSLRDPQQDSDRVKNPEWLVVIGVCTHLGCI 503
TVTVKWRGKPVFIRRRTEDDI LANSVDVGSLRDPQ+DS RVKNPEWLVV+GVCTHLGCI
Sbjct: 162 TVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCI 221
Query: 502 PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEGSHLHFL 374
PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLE FL
Sbjct: 222 PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFL 264
Score = 32.7 bits (73), Expect(2) = 1e-55
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -2
Query: 393 VPTYTFLEENKLLIG 349
VPTY+FLEENKLLIG
Sbjct: 258 VPTYSFLEENKLLIG 272
>sp|P49729|UCR1_TOBAC Ubiquinol-cytochrome C reductase iron-sulfur subunit 1,
mitochondrial precursor (Rieske iron-sulfur protein 1)
(RISP1) gi|100375|pir||B41607 ubiquinol-cytochrome-c
reductase (EC 1.10.2.2) Rieske iron-sulfur protein
precursor - common tobacco (fragment)
gi|170322|gb|AAA34112.1| Rieske Fe-S protein
Length = 258
Score = 206 bits (524), Expect(2) = 1e-55
Identities = 93/103 (90%), Positives = 98/103 (94%)
Frame = -1
Query: 682 TVTVKWRGKPVFIRRRTEDDINLANSVDVGSLRDPQQDSDRVKNPEWLVVIGVCTHLGCI 503
TVTVKWRGKPVFIRRRTEDDI+LANSVD+GSLRDPQQD++RVKNPEWLVVIGVCTHLGCI
Sbjct: 148 TVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCI 207
Query: 502 PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEGSHLHFL 374
PLPNAGD+GGWFCPCHGSHYDISGRIRKGPAPYNLE FL
Sbjct: 208 PLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFL 250
Score = 32.7 bits (73), Expect(2) = 1e-55
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -2
Query: 393 VPTYTFLEENKLLIG 349
VPTY+FLEENKLLIG
Sbjct: 244 VPTYSFLEENKLLIG 258
>pir||T48590 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) Rieske iron-sulfur
protein T22N19.80 [similarity] - Arabidopsis thaliana
gi|7543910|emb|CAB87150.1| ubiquinol--cytochrome-c
reductase-like protein [Arabidopsis thaliana]
Length = 240
Score = 206 bits (524), Expect(2) = 1e-55
Identities = 94/103 (91%), Positives = 96/103 (92%)
Frame = -1
Query: 682 TVTVKWRGKPVFIRRRTEDDINLANSVDVGSLRDPQQDSDRVKNPEWLVVIGVCTHLGCI 503
TVTVKWRGKPVFIRRRTEDDI LANSVDVGSLRDPQ+DS RVKNPEWLVV+GVCTHLGCI
Sbjct: 130 TVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCI 189
Query: 502 PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEGSHLHFL 374
PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLE FL
Sbjct: 190 PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFL 232
Score = 32.7 bits (73), Expect(2) = 1e-55
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -2
Query: 393 VPTYTFLEENKLLIG 349
VPTY+FLEENKLLIG
Sbjct: 226 VPTYSFLEENKLLIG 240
>sp|P51134|UCR4_TOBAC Ubiquinol-cytochrome C reductase iron-sulfur subunit 4,
mitochondrial precursor (Rieske iron-sulfur protein 4)
(RISP4) gi|7430475|pir||T02020 ubiquinol-cytochrome-c
reductase (EC 1.10.2.2) Rieske iron-sulfur protein
precursor - common tobacco gi|530054|gb|AAA20833.1|
Rieske iron-sulfur protein
Length = 236
Score = 206 bits (524), Expect(2) = 1e-55
Identities = 93/103 (90%), Positives = 98/103 (94%)
Frame = -1
Query: 682 TVTVKWRGKPVFIRRRTEDDINLANSVDVGSLRDPQQDSDRVKNPEWLVVIGVCTHLGCI 503
TVTVKWRGKPVFIRRRTEDDINLANSVD+GSLRDPQQD++RVK+PEWLVVIGVCTHLGCI
Sbjct: 126 TVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCI 185
Query: 502 PLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEGSHLHFL 374
PLPNAGD+GGWFCPCHGSHYDISGRIRKGPAPYNLE FL
Sbjct: 186 PLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFL 228
Score = 32.7 bits (73), Expect(2) = 1e-55
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -2
Query: 393 VPTYTFLEENKLLIG 349
VPTY+FLEENKLLIG
Sbjct: 222 VPTYSFLEENKLLIG 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 660,397,922
Number of Sequences: 1393205
Number of extensions: 16502078
Number of successful extensions: 44544
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 42583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44324
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
