Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001690A_C01 KMC001690A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64382.1| unknown [Arabidopsis thaliana] 192 2e-48
ref|NP_565394.1| expressed protein; protein id: At2g16800.1, sup... 192 2e-48
gb|AAL06469.1|AF411779_1 At2g16800/T24I21.21 [Arabidopsis thalia... 192 2e-48
pir||T05778 hypothetical protein M4E13.135 - Arabidopsis thalian... 184 8e-46
ref|NP_567976.1| putative protein; protein id: At4g35080.1, supp... 184 8e-46
>gb|AAM64382.1| unknown [Arabidopsis thaliana]
Length = 372
Score = 192 bits (489), Expect = 2e-48
Identities = 96/109 (88%), Positives = 102/109 (93%)
Frame = -2
Query: 581 DNPKTRKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLFGTVIAMGS 402
D +KKKIGFATFATGIVHGLQPDALMMVLPALALPSR+AGA+FLIMFL GTVIAMGS
Sbjct: 264 DEKSLKKKKIGFATFATGIVHGLQPDALMMVLPALALPSRIAGASFLIMFLIGTVIAMGS 323
Query: 401 YTVFIGSCSEALKDKVPRITEKLTWASSLIAIALGFAIIISQFFGFSLY 255
YTVFIGSCSEALK+KVPRITEKLTWASSL+AI LG AII+SQFFGFSLY
Sbjct: 324 YTVFIGSCSEALKEKVPRITEKLTWASSLVAIGLGLAIIVSQFFGFSLY 372
>ref|NP_565394.1| expressed protein; protein id: At2g16800.1, supported by cDNA:
23735., supported by cDNA: gi_15724153, supported by
cDNA: gi_20856413 [Arabidopsis thaliana]
gi|25365916|pir||D84544 hypothetical protein At2g16800
[imported] - Arabidopsis thaliana
gi|4581123|gb|AAD24613.1| expressed protein [Arabidopsis
thaliana]
Length = 372
Score = 192 bits (489), Expect = 2e-48
Identities = 96/109 (88%), Positives = 102/109 (93%)
Frame = -2
Query: 581 DNPKTRKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLFGTVIAMGS 402
D +KKKIGFATFATGIVHGLQPDALMMVLPALALPSR+AGA+FLIMFL GTVIAMGS
Sbjct: 264 DEKSLKKKKIGFATFATGIVHGLQPDALMMVLPALALPSRIAGASFLIMFLIGTVIAMGS 323
Query: 401 YTVFIGSCSEALKDKVPRITEKLTWASSLIAIALGFAIIISQFFGFSLY 255
YTVFIGSCSEALK+KVPRITEKLTWASSL+AI LG AII+SQFFGFSLY
Sbjct: 324 YTVFIGSCSEALKEKVPRITEKLTWASSLVAIGLGLAIIVSQFFGFSLY 372
>gb|AAL06469.1|AF411779_1 At2g16800/T24I21.21 [Arabidopsis thaliana]
gi|20856414|gb|AAM26665.1| At2g16800/T24I21.21
[Arabidopsis thaliana]
Length = 372
Score = 192 bits (489), Expect = 2e-48
Identities = 96/109 (88%), Positives = 102/109 (93%)
Frame = -2
Query: 581 DNPKTRKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLFGTVIAMGS 402
D +KKKIGFATFATGIVHGLQPDALMMVLPALALPSR+AGA+FLIMFL GTVIAMGS
Sbjct: 264 DEKSLKKKKIGFATFATGIVHGLQPDALMMVLPALALPSRIAGASFLIMFLIGTVIAMGS 323
Query: 401 YTVFIGSCSEALKDKVPRITEKLTWASSLIAIALGFAIIISQFFGFSLY 255
YTVFIGSCSEALK+KVPRITEKLTWASSL+AI LG AII+SQFFGFSLY
Sbjct: 324 YTVFIGSCSEALKEKVPRITEKLTWASSLVAIGLGLAIIVSQFFGFSLY 372
>pir||T05778 hypothetical protein M4E13.135 - Arabidopsis thaliana
gi|3115852|emb|CAA17779.1| putative protein [Arabidopsis
thaliana] gi|7270459|emb|CAB80225.1| putative protein
[Arabidopsis thaliana]
Length = 276
Score = 184 bits (467), Expect = 8e-46
Identities = 91/107 (85%), Positives = 98/107 (91%)
Frame = -2
Query: 575 PKTRKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLFGTVIAMGSYT 396
P +KKKIGFATFATG+VHGLQPDALM+VLPALALPSRLAG+AFLIMFL GTVIAMGSYT
Sbjct: 170 PLPKKKKIGFATFATGVVHGLQPDALMIVLPALALPSRLAGSAFLIMFLVGTVIAMGSYT 229
Query: 395 VFIGSCSEALKDKVPRITEKLTWASSLIAIALGFAIIISQFFGFSLY 255
FIGSCSEALK+KVPRITEKLTW SSL+AI LG I+IS FFGFSLY
Sbjct: 230 AFIGSCSEALKEKVPRITEKLTWVSSLVAIGLGLGIVISPFFGFSLY 276
>ref|NP_567976.1| putative protein; protein id: At4g35080.1, supported by cDNA:
gi_15146229, supported by cDNA: gi_19699141 [Arabidopsis
thaliana] gi|15146230|gb|AAK83598.1| AT4g35080/M4E13_135
[Arabidopsis thaliana] gi|19699142|gb|AAL90937.1|
AT4g35080/M4E13_135 [Arabidopsis thaliana]
Length = 365
Score = 184 bits (467), Expect = 8e-46
Identities = 91/107 (85%), Positives = 98/107 (91%)
Frame = -2
Query: 575 PKTRKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLFGTVIAMGSYT 396
P +KKKIGFATFATG+VHGLQPDALM+VLPALALPSRLAG+AFLIMFL GTVIAMGSYT
Sbjct: 259 PLPKKKKIGFATFATGVVHGLQPDALMIVLPALALPSRLAGSAFLIMFLVGTVIAMGSYT 318
Query: 395 VFIGSCSEALKDKVPRITEKLTWASSLIAIALGFAIIISQFFGFSLY 255
FIGSCSEALK+KVPRITEKLTW SSL+AI LG I+IS FFGFSLY
Sbjct: 319 AFIGSCSEALKEKVPRITEKLTWVSSLVAIGLGLGIVISPFFGFSLY 365
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,786,740
Number of Sequences: 1393205
Number of extensions: 9729822
Number of successful extensions: 25251
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 24569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25236
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
