Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001689A_C02 KMC001689A_c02
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T03406 probable isocitrate dehydrogenase (NAD) (EC 1.1.1.41... 194 9e-49
pir||T48350 3-isopropylmalate dehydrogenase-like protein - Arabi... 184 7e-46
ref|NP_568113.1| putative protein; protein id: At5g03290.1, supp... 184 7e-46
gb|AAO61642.1| NAD-dependent isocitrate dehydrogenase alpha subu... 184 7e-46
dbj|BAA88179.1| unnamed protein product [Oryza sativa (japonica ... 184 9e-46
>pir||T03406 probable isocitrate dehydrogenase (NAD) (EC 1.1.1.41) precursor -
common tobacco gi|3021506|emb|CAA65502.1| isocitrate
dehydrogenase (NAD+) [Nicotiana tabacum]
Length = 364
Score = 194 bits (493), Expect = 9e-49
Identities = 94/108 (87%), Positives = 101/108 (93%)
Frame = -3
Query: 658 YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAESVHGSAPDIAGKNLANPTALLLSGVTM 479
YGDIISDLCAG+IGGLGLTPSCNIGEGGIALAE+VHGSAPDIAGKNLANPTALLLS VTM
Sbjct: 257 YGDIISDLCAGVIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSAVTM 316
Query: 478 LRHLDLHDQADRIQNAILNTIAEGKYRTADLGGKSKTSEFTQAIIDHL 335
LRHL+LHD+ADRIQ A+LNTIAEGKYRT DLGG S T++FT AI DHL
Sbjct: 317 LRHLELHDKADRIQGAVLNTIAEGKYRTGDLGGTSSTTDFTNAICDHL 364
>pir||T48350 3-isopropylmalate dehydrogenase-like protein - Arabidopsis thaliana
gi|7378609|emb|CAB83285.1| 3-isopropylmalate
dehydrogenase-like protein [Arabidopsis thaliana]
gi|9757780|dbj|BAB08389.1| 3-isopropylmalate
dehydrogenase [Arabidopsis thaliana]
Length = 372
Score = 184 bits (468), Expect = 7e-46
Identities = 89/108 (82%), Positives = 100/108 (92%)
Frame = -3
Query: 658 YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAESVHGSAPDIAGKNLANPTALLLSGVTM 479
YGDIISDLCAGL+GGLGLTPSCNIGE G+ALAE+VHGSAPDIAGKNLANPTALLLSGV M
Sbjct: 265 YGDIISDLCAGLVGGLGLTPSCNIGEDGVALAEAVHGSAPDIAGKNLANPTALLLSGVMM 324
Query: 478 LRHLDLHDQADRIQNAILNTIAEGKYRTADLGGKSKTSEFTQAIIDHL 335
LRHL ++QA++I +AI+NTIAEGKYRTADLGG S T+EFT+AI DHL
Sbjct: 325 LRHLKFNEQAEQIHSAIINTIAEGKYRTADLGGSSTTTEFTKAICDHL 372
>ref|NP_568113.1| putative protein; protein id: At5g03290.1, supported by cDNA:
gi_15724319, supported by cDNA: gi_20466713 [Arabidopsis
thaliana] gi|15724320|gb|AAL06553.1|AF412100_1
W25EPL23M/W25EPL23M [Arabidopsis thaliana]
gi|20466714|gb|AAM20674.1| putative protein [Arabidopsis
thaliana]
Length = 374
Score = 184 bits (468), Expect = 7e-46
Identities = 89/108 (82%), Positives = 100/108 (92%)
Frame = -3
Query: 658 YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAESVHGSAPDIAGKNLANPTALLLSGVTM 479
YGDIISDLCAGL+GGLGLTPSCNIGE G+ALAE+VHGSAPDIAGKNLANPTALLLSGV M
Sbjct: 267 YGDIISDLCAGLVGGLGLTPSCNIGEDGVALAEAVHGSAPDIAGKNLANPTALLLSGVMM 326
Query: 478 LRHLDLHDQADRIQNAILNTIAEGKYRTADLGGKSKTSEFTQAIIDHL 335
LRHL ++QA++I +AI+NTIAEGKYRTADLGG S T+EFT+AI DHL
Sbjct: 327 LRHLKFNEQAEQIHSAIINTIAEGKYRTADLGGSSTTTEFTKAICDHL 374
>gb|AAO61642.1| NAD-dependent isocitrate dehydrogenase alpha subunit [Brassica
napus] gi|28974494|gb|AAO61643.1| NAD-dependent
isocitrate dehydrogenase alpha subunit [Brassica napus]
gi|28974496|gb|AAO61644.1| NAD-dependent isocitrate
dehydrogenase alpha subunit [Brassica napus]
Length = 330
Score = 184 bits (468), Expect = 7e-46
Identities = 89/108 (82%), Positives = 100/108 (92%)
Frame = -3
Query: 658 YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAESVHGSAPDIAGKNLANPTALLLSGVTM 479
YGDIISDLCAGL+GGLGLTPSCNIGE G+ALAE+VHGSAPDIAGKNLANPTALLLSGV M
Sbjct: 223 YGDIISDLCAGLVGGLGLTPSCNIGEDGVALAEAVHGSAPDIAGKNLANPTALLLSGVMM 282
Query: 478 LRHLDLHDQADRIQNAILNTIAEGKYRTADLGGKSKTSEFTQAIIDHL 335
LRHL L++QA++I AI+NTIAEGKYRTADLGG S T++FT+AI DHL
Sbjct: 283 LRHLKLNEQAEQIHRAIINTIAEGKYRTADLGGSSTTTDFTKAICDHL 330
>dbj|BAA88179.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 362
Score = 184 bits (467), Expect = 9e-46
Identities = 88/108 (81%), Positives = 99/108 (91%)
Frame = -3
Query: 658 YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAESVHGSAPDIAGKNLANPTALLLSGVTM 479
YGDIISDLCAGLIGGLGLTPSCNIGEGGI LAE+VHGSAPDIAGKNLANPTAL+LS V M
Sbjct: 255 YGDIISDLCAGLIGGLGLTPSCNIGEGGICLAEAVHGSAPDIAGKNLANPTALMLSAVMM 314
Query: 478 LRHLDLHDQADRIQNAILNTIAEGKYRTADLGGKSKTSEFTQAIIDHL 335
LRHL ++QADRI NAIL TI+EGK+RTADLGGK+ TS+FT+A+ DH+
Sbjct: 315 LRHLQFNNQADRIHNAILQTISEGKFRTADLGGKASTSDFTKAVCDHI 362
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,158,967
Number of Sequences: 1393205
Number of extensions: 11530446
Number of successful extensions: 36342
Number of sequences better than 10.0: 539
Number of HSP's better than 10.0 without gapping: 34513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35932
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
