Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001688A_C01 KMC001688A_c01
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181282.1| nodulin-like protein; protein id: At2g37460.1, ... 101 1e-20
gb|AAM62850.1| nodulin-like protein [Arabidopsis thaliana] 101 1e-20
pir||H84792 nodulin-like protein [imported] - Arabidopsis thaliana 96 6e-19
ref|NP_565861.1| nodulin-like protein; protein id: At2g37450.1, ... 96 6e-19
ref|NP_181483.1| nodulin-like protein; protein id: At2g39510.1 [... 90 3e-17
>ref|NP_181282.1| nodulin-like protein; protein id: At2g37460.1, supported by cDNA:
16393., supported by cDNA: gi_14334857, supported by
cDNA: gi_14994252, supported by cDNA: gi_17104640
[Arabidopsis thaliana] gi|25408556|pir||A84793
nodulin-like protein [imported] - Arabidopsis thaliana
gi|4056506|gb|AAC98072.1| nodulin-like protein
[Arabidopsis thaliana] gi|14334858|gb|AAK59607.1|
putative nodulin protein [Arabidopsis thaliana]
gi|14994253|gb|AAK73261.1| nodulin-like protein
[Arabidopsis thaliana] gi|17104641|gb|AAL34209.1|
putative nodulin protein [Arabidopsis thaliana]
Length = 380
Score = 101 bits (252), Expect = 1e-20
Identities = 53/106 (50%), Positives = 67/106 (63%)
Frame = -2
Query: 768 KGPVFVTAFNPLCMVIVAILGSFCLAEQMYLGRVIGAIVILLGLYLVVWGKNKDYDSPPS 589
+GPVFVTAF+PLCM+IVAI+ + AEQMYLGRV+GA+VI GLYLV+WGK KDY +
Sbjct: 278 RGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKYNST 337
Query: 588 PIINEHVLPDKQTTESNAKDKEKPSNHELITISNIGAGNLAQYEQV 451
+++ K N KD +HE+ITIS G E V
Sbjct: 338 LQLDDESAQPKLELSGNGKDN---VDHEVITISKQGEQRRTAVETV 380
>gb|AAM62850.1| nodulin-like protein [Arabidopsis thaliana]
Length = 362
Score = 101 bits (251), Expect = 1e-20
Identities = 53/106 (50%), Positives = 67/106 (63%)
Frame = -2
Query: 768 KGPVFVTAFNPLCMVIVAILGSFCLAEQMYLGRVIGAIVILLGLYLVVWGKNKDYDSPPS 589
+GPVFVTAF+PLCM+IVAI+ + AEQMYLGRV+GA+VI GLYLV+WGK KDY +
Sbjct: 260 RGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKYNST 319
Query: 588 PIINEHVLPDKQTTESNAKDKEKPSNHELITISNIGAGNLAQYEQV 451
+++ K N KD +HE+ITIS G E V
Sbjct: 320 LQLDDKSAQPKLELSGNGKDN---VDHEVITISKQGEQRRTAVETV 362
>pir||H84792 nodulin-like protein [imported] - Arabidopsis thaliana
Length = 357
Score = 95.9 bits (237), Expect = 6e-19
Identities = 45/83 (54%), Positives = 60/83 (72%)
Frame = -2
Query: 768 KGPVFVTAFNPLCMVIVAILGSFCLAEQMYLGRVIGAIVILLGLYLVVWGKNKDYDSPPS 589
+GPVFVTAF PLCM++VAI+ S EQMYLGR +GA VI +GLYLV+WGK KDY+ P +
Sbjct: 272 RGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVIWGKAKDYEYPST 331
Query: 588 PIINEHVLPDKQTTESNAKDKEK 520
P I++ + Q T S K++ +
Sbjct: 332 PQIDDDL---AQATTSKQKEQRR 351
>ref|NP_565861.1| nodulin-like protein; protein id: At2g37450.1, supported by cDNA:
gi_14994262 [Arabidopsis thaliana]
gi|14994263|gb|AAK73266.1| nodulin-like protein
[Arabidopsis thaliana] gi|20197474|gb|AAC98071.2|
nodulin-like protein [Arabidopsis thaliana]
Length = 297
Score = 95.9 bits (237), Expect = 6e-19
Identities = 45/83 (54%), Positives = 60/83 (72%)
Frame = -2
Query: 768 KGPVFVTAFNPLCMVIVAILGSFCLAEQMYLGRVIGAIVILLGLYLVVWGKNKDYDSPPS 589
+GPVFVTAF PLCM++VAI+ S EQMYLGR +GA VI +GLYLV+WGK KDY+ P +
Sbjct: 212 RGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVIWGKAKDYEYPST 271
Query: 588 PIINEHVLPDKQTTESNAKDKEK 520
P I++ + Q T S K++ +
Sbjct: 272 PQIDDDL---AQATTSKQKEQRR 291
>ref|NP_181483.1| nodulin-like protein; protein id: At2g39510.1 [Arabidopsis
thaliana] gi|7485410|pir||T00561 nodulin-like protein
[imported] - Arabidopsis thaliana
gi|3355480|gb|AAC27842.1| nodulin-like protein
[Arabidopsis thaliana]
Length = 374
Score = 90.1 bits (222), Expect = 3e-17
Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 12/102 (11%)
Frame = -2
Query: 768 KGPVFVTAFNPLCMVIVAILGSFCLAEQMYLGRVIGAIVILLGLYLVVWGKNKDYDSPPS 589
+GPVFVTAFNPL MVIVAILGS LAE M+LGR++GAIVI+LGLY V+WGK+KD S
Sbjct: 273 RGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKDEPSSSF 332
Query: 588 PIINEH--------VLPDKQTTESNAKDK----EKPSNHELI 499
+++ VLP K + + D +P+ +E +
Sbjct: 333 SDMDKELPLSTPQIVLPSKANAKMDTNDASVVISRPNTNESV 374
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 616,486,359
Number of Sequences: 1393205
Number of extensions: 12850589
Number of successful extensions: 44851
Number of sequences better than 10.0: 8189
Number of HSP's better than 10.0 without gapping: 43062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44830
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
