Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001684A_C01 KMC001684A_c01
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06909.1| hypothetical protein~similar to Arabidopsis thal... 84 2e-15
gb|AAK62787.1|AC027036_8 unknown protein [Arabidopsis thaliana] 80 2e-14
ref|NP_564742.1| expressed protein; protein id: At1g59510.1, sup... 80 2e-14
ref|NP_190548.1| putative protein; protein id: At3g49790.1 [Arab... 80 3e-14
gb|AAM62640.1| unknown [Arabidopsis thaliana] 79 4e-14
>dbj|BAC06909.1| hypothetical protein~similar to Arabidopsis thaliana chromosome
1,At1g10150 [Oryza sativa (japonica cultivar-group)]
gi|28201300|dbj|BAC56808.1| P0474G09.4 [Oryza sativa
(japonica cultivar-group)]
Length = 376
Score = 83.6 bits (205), Expect = 2e-15
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = -3
Query: 629 GWVSKVSSTLAIPSHRRLVLDVTGRVTFETVRSFMEFVLKTLCASVRRCAHSVHYAVLEI 450
GWV VS+ LA+PS+RRLVLD+TGR TFE VRSF++FV+ L R + A L
Sbjct: 277 GWVETVSTVLAVPSNRRLVLDLTGRATFEAVRSFLDFVMWRLHEGARAGGDAAIGAGLCA 336
Query: 449 MRYAAAKFSVIATICISLCLHVMD 378
+R+ + + VIA ICI+LCLH+++
Sbjct: 337 LRHMSERSMVIAAICIALCLHLLN 360
>gb|AAK62787.1|AC027036_8 unknown protein [Arabidopsis thaliana]
Length = 749
Score = 80.5 bits (197), Expect = 2e-14
Identities = 38/93 (40%), Positives = 59/93 (62%), Gaps = 4/93 (4%)
Frame = -3
Query: 644 EENKSGWVSKVSSTLAIPSHRRLVLDVTGRVTFETVRSFMEFVLKTLCASVRRCAHSVHY 465
E ++GW +S+TLA+PS+R+ + DVTGRVT ET+RS +EFV+ S +R +H
Sbjct: 275 ENRENGWAEALSTTLAVPSNRKFMFDVTGRVTLETMRSILEFVILKTSQSFKRSLDVIHE 334
Query: 464 AVLE----IMRYAAAKFSVIATICISLCLHVMD 378
V E ++ Y AK SVI T+C+++ H+ +
Sbjct: 335 EVTERGRQVVGYVGAKSSVIITVCLAVYFHIFN 367
>ref|NP_564742.1| expressed protein; protein id: At1g59510.1, supported by cDNA:
150507., supported by cDNA: gi_6520209 [Arabidopsis
thaliana] gi|25339474|pir||T52434 hypothetical protein
CF9 [imported] - Arabidopsis thaliana
gi|6520210|dbj|BAA87951.1| CF9 [Arabidopsis thaliana]
gi|8778734|gb|AAF79742.1|AC009317_1 T30E16.3
[Arabidopsis thaliana] gi|18146722|dbj|BAB82428.1|
hypothetical protein [Arabidopsis thaliana]
Length = 381
Score = 80.5 bits (197), Expect = 2e-14
Identities = 38/93 (40%), Positives = 59/93 (62%), Gaps = 4/93 (4%)
Frame = -3
Query: 644 EENKSGWVSKVSSTLAIPSHRRLVLDVTGRVTFETVRSFMEFVLKTLCASVRRCAHSVHY 465
E ++GW +S+TLA+PS+R+ + DVTGRVT ET+RS +EFV+ S +R +H
Sbjct: 275 ENRENGWAEALSTTLAVPSNRKFMFDVTGRVTLETMRSILEFVILKTSQSFKRSLDVIHE 334
Query: 464 AVLE----IMRYAAAKFSVIATICISLCLHVMD 378
V E ++ Y AK SVI T+C+++ H+ +
Sbjct: 335 EVTERGRQVVGYVGAKSSVIITVCLAVYFHIFN 367
>ref|NP_190548.1| putative protein; protein id: At3g49790.1 [Arabidopsis thaliana]
gi|11280710|pir||T46045 hypothetical protein T16K5.140 -
Arabidopsis thaliana gi|6723424|emb|CAB66917.1| putative
protein [Arabidopsis thaliana]
Length = 366
Score = 79.7 bits (195), Expect = 3e-14
Identities = 36/90 (40%), Positives = 58/90 (64%)
Frame = -3
Query: 626 WVSKVSSTLAIPSHRRLVLDVTGRVTFETVRSFMEFVLKTLCASVRRCAHSVHYAVLEIM 447
W+ +VSS+L++PS+R+ V+D+TGRVTFETVRS +E +++ V V E
Sbjct: 275 WIDRVSSSLSVPSNRKYVVDLTGRVTFETVRSLLEVLIERANGKVESYVEKVRERGNETR 334
Query: 446 RYAAAKFSVIATICISLCLHVMDCPRALVP 357
R+ K S++ ++C+SLCL +++ P L P
Sbjct: 335 RFVRVKTSLLHSLCLSLCLQIVEAPWMLTP 364
>gb|AAM62640.1| unknown [Arabidopsis thaliana]
Length = 382
Score = 79.3 bits (194), Expect = 4e-14
Identities = 37/93 (39%), Positives = 59/93 (62%), Gaps = 4/93 (4%)
Frame = -3
Query: 644 EENKSGWVSKVSSTLAIPSHRRLVLDVTGRVTFETVRSFMEFVLKTLCASVRRCAHSVHY 465
E ++GW +S+TLA+PS+++ + DVTGRVT ET+RS +EFV+ S +R +H
Sbjct: 276 ENRENGWAEALSTTLAVPSNKKFMFDVTGRVTLETMRSILEFVILKTSQSFKRSLDVIHE 335
Query: 464 AVLE----IMRYAAAKFSVIATICISLCLHVMD 378
V E ++ Y AK SVI T+C+++ H+ +
Sbjct: 336 EVTERGRQVVGYVGAKSSVIITVCLAVYFHIFN 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,601,661
Number of Sequences: 1393205
Number of extensions: 12702097
Number of successful extensions: 30053
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 28808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30012
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
