Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001680A_C01 KMC001680A_c01
(1317 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567541.1| expressed protein; protein id: At4g17790.1, sup... 389 e-107
gb|AAM65735.1| unknown [Arabidopsis thaliana] 387 e-106
ref|NP_565028.1| expressed protein; protein id: At1g71940.1, sup... 336 4e-91
gb|AAM20146.1| unknown protein [Arabidopsis thaliana] gi|2128123... 321 1e-86
ref|NP_192696.2| putative protein; protein id: At4g09580.1 [Arab... 313 5e-84
>ref|NP_567541.1| expressed protein; protein id: At4g17790.1, supported by cDNA: 42815.
[Arabidopsis thaliana] gi|7485060|pir||B71448
hypothetical protein - Arabidopsis thaliana
gi|2245138|emb|CAB10559.1| hypothetical protein
[Arabidopsis thaliana] gi|7268532|emb|CAB78782.1|
hypothetical protein [Arabidopsis thaliana]
Length = 264
Score = 389 bits (998), Expect = e-107
Identities = 190/255 (74%), Positives = 220/255 (85%)
Frame = -1
Query: 1194 TKGAVVPEPAPAPAPAKFPFSYWEAAVASTVAVGFLSSILCVYLTMPDSDYSFLKFPHTL 1015
T G V PA P P + S+WE AS V +GF+ ++CVYLTMP SDYSFLK P L
Sbjct: 11 TIGVVPAAPAKLPTPI-YSLSFWEVTAASGVVLGFILGLVCVYLTMPQSDYSFLKLPRNL 69
Query: 1014 EDLKLLRDNLETYTSDYTAQVWVGYCVVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALV 835
EDL++LRDNLE YTSDYT QV VGYC+VY+FMQTFMIPGTVFMSLLAGALFGV KG+ALV
Sbjct: 70 EDLQILRDNLEIYTSDYTVQVLVGYCLVYVFMQTFMIPGTVFMSLLAGALFGVVKGMALV 129
Query: 834 VFNATAGASSCFFLSKVVGRPLLSTLWPDKLLFFQNQVAKRRKGLLNYMLFLRLTPTLPN 655
V ATAGASSC+FLSK++GRPLL +LWPDKL+FFQ+QVA+R+ LLNYMLFLRLTPTLPN
Sbjct: 130 VSTATAGASSCYFLSKLIGRPLLFSLWPDKLVFFQDQVARRKDRLLNYMLFLRLTPTLPN 189
Query: 654 TFINFASPVVNVPYHIFFIATVIGLIPAAYVTVRAGLALGELKSVGDLYDFNSVATLCLI 475
TFIN ASP+V+VPYHIFF+AT IGLIPAA+VTVRAGLALGELKS+GDLYDF+S+ATLCLI
Sbjct: 190 TFINVASPIVDVPYHIFFLATFIGLIPAAFVTVRAGLALGELKSLGDLYDFSSMATLCLI 249
Query: 474 GVVSITPTLISKKES 430
GV+S+TPTLI KK++
Sbjct: 250 GVLSVTPTLIGKKQA 264
>gb|AAM65735.1| unknown [Arabidopsis thaliana]
Length = 264
Score = 387 bits (994), Expect = e-106
Identities = 189/255 (74%), Positives = 219/255 (85%)
Frame = -1
Query: 1194 TKGAVVPEPAPAPAPAKFPFSYWEAAVASTVAVGFLSSILCVYLTMPDSDYSFLKFPHTL 1015
T G V P P P + S+WE AS V +GF+ ++CVYLTMP SDYSFLK P L
Sbjct: 11 TIGVVPAAPXKLPTPI-YSLSFWEVTAASGVVLGFILGLVCVYLTMPQSDYSFLKLPRNL 69
Query: 1014 EDLKLLRDNLETYTSDYTAQVWVGYCVVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALV 835
EDL++LRDNLE YTSDYT QV VGYC+VY+FMQTFMIPGTVFMSLLAGALFGV KG+ALV
Sbjct: 70 EDLQILRDNLEIYTSDYTVQVLVGYCLVYVFMQTFMIPGTVFMSLLAGALFGVVKGMALV 129
Query: 834 VFNATAGASSCFFLSKVVGRPLLSTLWPDKLLFFQNQVAKRRKGLLNYMLFLRLTPTLPN 655
V ATAGASSC+FLSK++GRPLL +LWPDKL+FFQ+QVA+R+ LLNYMLFLRLTPTLPN
Sbjct: 130 VSTATAGASSCYFLSKLIGRPLLLSLWPDKLVFFQDQVARRKDRLLNYMLFLRLTPTLPN 189
Query: 654 TFINFASPVVNVPYHIFFIATVIGLIPAAYVTVRAGLALGELKSVGDLYDFNSVATLCLI 475
TFIN ASP+V+VPYHIFF+AT IGLIPAA+VTVRAGLALGELKS+GDLYDF+S+ATLCLI
Sbjct: 190 TFINVASPIVDVPYHIFFLATFIGLIPAAFVTVRAGLALGELKSLGDLYDFSSMATLCLI 249
Query: 474 GVVSITPTLISKKES 430
GV+S+TPTLI KK++
Sbjct: 250 GVLSVTPTLIGKKQA 264
>ref|NP_565028.1| expressed protein; protein id: At1g71940.1, supported by cDNA:
38138., supported by cDNA: gi_18700126, supported by
cDNA: gi_20453394 [Arabidopsis thaliana]
gi|25406129|pir||C96742 unknown protein F17M19.9
[imported] - Arabidopsis thaliana
gi|12324535|gb|AAG52221.1|AC021665_4 unknown protein;
51119-52286 [Arabidopsis thaliana]
gi|18700127|gb|AAL77675.1| At1g71940/F17M19_9
[Arabidopsis thaliana] gi|20453395|gb|AAM19936.1|
At1g71940/F17M19_9 [Arabidopsis thaliana]
gi|21593331|gb|AAM65280.1| unknown [Arabidopsis thaliana]
Length = 272
Score = 336 bits (862), Expect = 4e-91
Identities = 157/238 (65%), Positives = 199/238 (82%)
Frame = -1
Query: 1146 KFPFSYWEAAVASTVAVGFLSSILCVYLTMPDSDYSFLKFPHTLEDLKLLRDNLETYTSD 967
+FP S WE AV+ V + F S + C+Y+TMP +++ LK P +L DL+LL+DNL Y ++
Sbjct: 32 RFPLSRWELAVSLGVFLVFSSGLCCIYMTMPAAEFGKLKLPRSLADLRLLKDNLANYANE 91
Query: 966 YTAQVWVGYCVVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALVVFNATAGASSCFFLSK 787
Y AQ +GYC YIFMQTFMIPGT+FMSLLAGALFGVFKGV LVVFNATAGA+SCFFLSK
Sbjct: 92 YPAQFVLGYCATYIFMQTFMIPGTIFMSLLAGALFGVFKGVVLVVFNATAGATSCFFLSK 151
Query: 786 VVGRPLLSTLWPDKLLFFQNQVAKRRKGLLNYMLFLRLTPTLPNTFINFASPVVNVPYHI 607
++GRPL++ LWPDKL FFQ +++KRR LLNYMLFLR+TPTLPN FIN ASP+V+VP+H+
Sbjct: 152 LIGRPLITWLWPDKLRFFQAEISKRRDKLLNYMLFLRITPTLPNLFINLASPIVDVPFHV 211
Query: 606 FFIATVIGLIPAAYVTVRAGLALGELKSVGDLYDFNSVATLCLIGVVSITPTLISKKE 433
FF+AT+IGLIPAAY+TVRAGLA+G+LKSV DLYDF +++ L LIG +SI PT++ +K+
Sbjct: 212 FFLATLIGLIPAAYITVRAGLAIGDLKSVKDLYDFKTLSVLFLIGFISILPTILKRKK 269
>gb|AAM20146.1| unknown protein [Arabidopsis thaliana] gi|21281237|gb|AAM45090.1|
unknown protein [Arabidopsis thaliana]
Length = 287
Score = 321 bits (823), Expect = 1e-86
Identities = 150/237 (63%), Positives = 194/237 (81%)
Frame = -1
Query: 1146 KFPFSYWEAAVASTVAVGFLSSILCVYLTMPDSDYSFLKFPHTLEDLKLLRDNLETYTSD 967
+FP S WE AV TV + F + + C+YLTMP ++Y LK P T+ DL+LL++NL +Y S+
Sbjct: 47 RFPLSRWEFAVFFTVFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASE 106
Query: 966 YTAQVWVGYCVVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALVVFNATAGASSCFFLSK 787
Y A+ +GYC YIFMQTFMIPGT+FMSLLAGALFGV +G LVV NATAGA SCFFLSK
Sbjct: 107 YQARFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSK 166
Query: 786 VVGRPLLSTLWPDKLLFFQNQVAKRRKGLLNYMLFLRLTPTLPNTFINFASPVVNVPYHI 607
+VGRPL++ LWP+KL FFQ ++AKRR LLNYMLFLR+TPTLPN FIN +SP+V++P+H+
Sbjct: 167 LVGRPLVNWLWPEKLRFFQAEIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHV 226
Query: 606 FFIATVIGLIPAAYVTVRAGLALGELKSVGDLYDFNSVATLCLIGVVSITPTLISKK 436
FF+AT++GL+PA+Y+TVRAGLALG+L+SV DLYDF +++ L LIG +SI P L+ +K
Sbjct: 227 FFLATLVGLMPASYITVRAGLALGDLRSVKDLYDFKTLSVLFLIGSISIFPALLKRK 283
>ref|NP_192696.2| putative protein; protein id: At4g09580.1 [Arabidopsis thaliana]
Length = 285
Score = 313 bits (801), Expect = 5e-84
Identities = 148/237 (62%), Positives = 192/237 (80%)
Frame = -1
Query: 1146 KFPFSYWEAAVASTVAVGFLSSILCVYLTMPDSDYSFLKFPHTLEDLKLLRDNLETYTSD 967
+FP S WE AV TV + F + + C+YLTMP ++Y LK P T+ DL+LL++NL +Y S+
Sbjct: 47 RFPLSRWEFAVFFTVFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASE 106
Query: 966 YTAQVWVGYCVVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALVVFNATAGASSCFFLSK 787
Y A+ +GYC YIFMQTFMIPGT+FMSLLAGALFGV +G LVV NATAGA SCFFLSK
Sbjct: 107 YQARFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSK 166
Query: 786 VVGRPLLSTLWPDKLLFFQNQVAKRRKGLLNYMLFLRLTPTLPNTFINFASPVVNVPYHI 607
+VGRPL++ LWP+KL FFQ ++AKRR LLNYMLFLR+TPTLPN FIN +SP+V++P+H+
Sbjct: 167 LVGRPLVNWLWPEKLRFFQAEIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHV 226
Query: 606 FFIATVIGLIPAAYVTVRAGLALGELKSVGDLYDFNSVATLCLIGVVSITPTLISKK 436
FF+AT++GL+PA+Y+T AGLALG+L+SV DLYDF +++ L LIG +SI P L+ +K
Sbjct: 227 FFLATLVGLMPASYIT--AGLALGDLRSVKDLYDFKTLSVLFLIGSISIFPALLKRK 281
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,216,381,833
Number of Sequences: 1393205
Number of extensions: 29895420
Number of successful extensions: 110949
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 87967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107483
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 85221370104
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
