Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001677A_C01 KMC001677A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566577.1| expressed protein; protein id: At3g17430.1, sup... 73 2e-12
pir||B96522 hypothetical protein F11A17.21 [imported] - Arabidop... 66 2e-10
gb|AAF79542.1|AC023673_30 F21D18.5 [Arabidopsis thaliana] 66 2e-10
ref|NP_175257.1| unknown protein; protein id: At1g48230.1 [Arabi... 66 2e-10
gb|AAO52224.1| hypothetical protein [Dictyostelium discoideum] 33 1.6
>ref|NP_566577.1| expressed protein; protein id: At3g17430.1, supported by cDNA:
gi_16648966, supported by cDNA: gi_20259901 [Arabidopsis
thaliana] gi|11994681|dbj|BAB02919.1|
gb|AAD49773.1~gene_id:MTO12.2~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|16648967|gb|AAL24335.1| Unknown protein [Arabidopsis
thaliana] gi|20259902|gb|AAM13298.1| unknown protein
[Arabidopsis thaliana]
Length = 375
Score = 73.2 bits (178), Expect = 2e-12
Identities = 44/77 (57%), Positives = 55/77 (71%)
Frame = -2
Query: 527 IKVKDVRASQLPAESIPDRLTKDWKFEKKSSDIFVPDSVSENEGSSGGDGIASDINFDEE 348
IKV+DV+ASQ A+S+PDR+ K++K EKKSSD F P+ E G ++N DEE
Sbjct: 302 IKVRDVKASQPTADSLPDRINKEYKMEKKSSDKFNPNDSVEIPRVGG------EVN-DEE 354
Query: 347 APLISSSRLSHIGRTQL 297
APLI +SRLSHIGRTQL
Sbjct: 355 APLI-TSRLSHIGRTQL 370
>pir||B96522 hypothetical protein F11A17.21 [imported] - Arabidopsis thaliana
gi|5733885|gb|AAD49773.1|AC007932_21 ESTs gb|T22141 and
gb|H37217 come from this gene. [Arabidopsis thaliana]
Length = 389
Score = 66.2 bits (160), Expect = 2e-10
Identities = 42/77 (54%), Positives = 50/77 (64%)
Frame = -2
Query: 527 IKVKDVRASQLPAESIPDRLTKDWKFEKKSSDIFVPDSVSENEGSSGGDGIASDINFDEE 348
IK+KDV+A Q +S+PDR+TKDWK EK SSD GG ++N DEE
Sbjct: 324 IKIKDVKAIQPTTDSLPDRITKDWK-EKNSSD--------------GGSPRGLELN-DEE 367
Query: 347 APLISSSRLSHIGRTQL 297
APLI +SRLSHIGRTQL
Sbjct: 368 APLI-TSRLSHIGRTQL 383
>gb|AAF79542.1|AC023673_30 F21D18.5 [Arabidopsis thaliana]
Length = 375
Score = 66.2 bits (160), Expect = 2e-10
Identities = 42/77 (54%), Positives = 50/77 (64%)
Frame = -2
Query: 527 IKVKDVRASQLPAESIPDRLTKDWKFEKKSSDIFVPDSVSENEGSSGGDGIASDINFDEE 348
IK+KDV+A Q +S+PDR+TKDWK EK SSD GG ++N DEE
Sbjct: 310 IKIKDVKAIQPTTDSLPDRITKDWK-EKNSSD--------------GGSPRGLELN-DEE 353
Query: 347 APLISSSRLSHIGRTQL 297
APLI +SRLSHIGRTQL
Sbjct: 354 APLI-TSRLSHIGRTQL 369
>ref|NP_175257.1| unknown protein; protein id: At1g48230.1 [Arabidopsis thaliana]
Length = 367
Score = 66.2 bits (160), Expect = 2e-10
Identities = 42/77 (54%), Positives = 50/77 (64%)
Frame = -2
Query: 527 IKVKDVRASQLPAESIPDRLTKDWKFEKKSSDIFVPDSVSENEGSSGGDGIASDINFDEE 348
IK+KDV+A Q +S+PDR+TKDWK EK SSD GG ++N DEE
Sbjct: 302 IKIKDVKAIQPTTDSLPDRITKDWK-EKNSSD--------------GGSPRGLELN-DEE 345
Query: 347 APLISSSRLSHIGRTQL 297
APLI +SRLSHIGRTQL
Sbjct: 346 APLI-TSRLSHIGRTQL 361
>gb|AAO52224.1| hypothetical protein [Dictyostelium discoideum]
Length = 1389
Score = 33.5 bits (75), Expect = 1.6
Identities = 20/60 (33%), Positives = 36/60 (59%), Gaps = 4/60 (6%)
Frame = +1
Query: 319 DNLDDEINGASSSKFISEAIP----SPPLLPSFSLTLSGTKISDDFFSNFQSLVNRSGIL 486
+N++ NG+SSS++IS IP S L P+FS+ L +KI + + QS + ++ ++
Sbjct: 1284 NNINSTSNGSSSSQYISIQIPNYKTSVELDPNFSVLLESSKIENSTCNKNQSGLTKTQLI 1343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,920,395
Number of Sequences: 1393205
Number of extensions: 8075435
Number of successful extensions: 22715
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22651
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
