Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001676A_C01 KMC001676A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC10209.1| putative extracellular dermal glycoprotein [Cice... 138 5e-32
ref|NP_171821.1| unknown protein; protein id: At1g03220.1, suppo... 117 9e-26
gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana] 116 2e-25
ref|NP_197412.1| dermal glycoprotein - like; protein id: At5g191... 115 4e-25
ref|NP_563679.1| expressed protein; protein id: At1g03230.1, sup... 112 3e-24
>emb|CAC10209.1| putative extracellular dermal glycoprotein [Cicer arietinum]
Length = 369
Score = 138 bits (348), Expect = 5e-32
Identities = 68/130 (52%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = -2
Query: 622 SIYKPFVRDFVKKASARKIKRVKSVAPFEACFDAGSIDDLDMGPAVPVIELLFDGGLKYE 443
S+YKPF+RDF+KKAS RK+K+V+SVAPFEACF++ +I++ ++P I+L+ GG+++
Sbjct: 245 SVYKPFIRDFLKKASDRKLKKVESVAPFEACFESTNIEN-----SLPRIDLVLQGGVQWS 299
Query: 442 MFGHNTMVEVKEKVLCLAFVDGGKK-----AKNAVVLGGRQLEDKILEFDLSTSILTFSS 278
++G+N MV VK+ V CL FVDGG + AK ++V+GG QLED +L FDL++S L+FSS
Sbjct: 300 IYGNNLMVNVKKNVACLGFVDGGTEPRMSFAKASIVIGGHQLEDNLLVFDLNSSKLSFSS 359
Query: 277 SLLLQGETCS 248
SLL+ +CS
Sbjct: 360 SLLVHNASCS 369
>ref|NP_171821.1| unknown protein; protein id: At1g03220.1, supported by cDNA:
12454., supported by cDNA: gi_13272442, supported by
cDNA: gi_14334705, supported by cDNA: gi_16323419
[Arabidopsis thaliana] gi|25296172|pir||F86163
hypothetical protein F15K9.17 - Arabidopsis thaliana
gi|3850579|gb|AAC72119.1| Strong similarity to gb|D14550
extracellular dermal glycoprotein (EDGP) precursor from
Daucus carota. ESTs gb|H37281, gb|T44167, gb|T21813,
gb|N38437, gb|Z26470, gb|R65072, gb|N76373, gb|F15470,
gb|Z35182, gb|H76373, gb|Z34678 and gb|Z35387 come from
this gene. [Arabidopsis thaliana]
gi|13272443|gb|AAK17160.1|AF325092_1 unknown protein
[Arabidopsis thaliana] gi|14334706|gb|AAK59531.1|
unknown protein [Arabidopsis thaliana]
gi|16323420|gb|AAL15204.1| unknown protein [Arabidopsis
thaliana]
Length = 433
Score = 117 bits (294), Expect = 9e-26
Identities = 62/127 (48%), Positives = 86/127 (66%), Gaps = 1/127 (0%)
Frame = -2
Query: 622 SIYKPFVRDFVKKASARKIKRVKSVAPFEACFDAGSIDDLDMGPAVPVIEL-LFDGGLKY 446
SIY F +FVK+A+AR IKRV SV PF ACF ++ +G AVP IEL L + +
Sbjct: 300 SIYNAFTSEFVKQAAARSIKRVASVKPFGACFSTKNVGVTRLGYAVPEIELVLHSKDVVW 359
Query: 445 EMFGHNTMVEVKEKVLCLAFVDGGKKAKNAVVLGGRQLEDKILEFDLSTSILTFSSSLLL 266
+FG N+MV V + V+CL FVDGG A+ +VV+GG QLED ++EFDL+++ FSS+LL
Sbjct: 360 RIFGANSMVSVSDDVICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNKFGFSSTLLG 419
Query: 265 QGETCSD 245
+ C++
Sbjct: 420 RQTNCAN 426
>gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana]
Length = 433
Score = 116 bits (291), Expect = 2e-25
Identities = 62/127 (48%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Frame = -2
Query: 622 SIYKPFVRDFVKKASARKIKRVKSVAPFEACFDAGSIDDLDMGPAVPVIEL-LFDGGLKY 446
SIY F +FVK+A AR IKRV SV PF ACF ++ +G AVP IEL L + +
Sbjct: 300 SIYNAFTSEFVKQALARSIKRVASVKPFGACFSTKNVGVTRLGYAVPEIELVLHSKDVVW 359
Query: 445 EMFGHNTMVEVKEKVLCLAFVDGGKKAKNAVVLGGRQLEDKILEFDLSTSILTFSSSLLL 266
+FG N+MV V + V+CL FVDGG A+ +VV+GG QLED ++EFDL+++ FSS+LL
Sbjct: 360 RIFGANSMVSVSDDVICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNRFGFSSTLLG 419
Query: 265 QGETCSD 245
+ C++
Sbjct: 420 RQTNCAN 426
>ref|NP_197412.1| dermal glycoprotein - like; protein id: At5g19110.1 [Arabidopsis
thaliana]
Length = 405
Score = 115 bits (289), Expect = 4e-25
Identities = 62/128 (48%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
Frame = -2
Query: 619 IYKPFVRDFVKKASARKIKRVKSVAPFEACFDAGSID-DLDMGPAVPVIELLFDGGL--- 452
IY + F KA A I +V SVAPF+ CFD+ + +L GP VPVIE+ G +
Sbjct: 272 IYNALAQSFTLKAKAMGIAKVPSVAPFKHCFDSRTAGKNLTAGPNVPVIEIGLPGRIGEV 331
Query: 451 KYEMFGHNTMVEVKEKVLCLAFVDGGKKAKNAVVLGGRQLEDKILEFDLSTSILTFSSSL 272
K+ +G NT+V+VKE V+CLAF+DGGK K+ +V+G QL+D +LEFD S ++L FS SL
Sbjct: 332 KWGFYGANTVVKVKETVMCLAFIDGGKTPKDLMVIGTHQLQDHMLEFDFSGTVLAFSESL 391
Query: 271 LLQGETCS 248
LL +CS
Sbjct: 392 LLHNTSCS 399
>ref|NP_563679.1| expressed protein; protein id: At1g03230.1, supported by cDNA:
gi_12083229 [Arabidopsis thaliana]
gi|25296173|pir||G86163 hypothetical protein F15K9.16 -
Arabidopsis thaliana gi|3850580|gb|AAC72120.1| Strong
similarity to gb|D14550 extracellular dermal
glycoprotein (EDGP) precursor from Daucus carota. ESTs
gb|84105 and gb|AI100071 come from this gene.
[Arabidopsis thaliana]
gi|12083230|gb|AAG48774.1|AF332411_1 unknown protein
[Arabidopsis thaliana]
Length = 434
Score = 112 bits (281), Expect = 3e-24
Identities = 59/127 (46%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Frame = -2
Query: 622 SIYKPFVRDFVKKASARKIKRVKSVAPFEACFDAGSIDDLDMGPAVPVIEL-LFDGGLKY 446
SIYK F +F+++A+AR IKRV SV PF ACF ++ +G AVP I+L L + +
Sbjct: 301 SIYKAFTSEFIRQAAARSIKRVASVKPFGACFSTKNVGVTRLGYAVPEIQLVLHSKDVVW 360
Query: 445 EMFGHNTMVEVKEKVLCLAFVDGGKKAKNAVVLGGRQLEDKILEFDLSTSILTFSSSLLL 266
+FG N+MV V + V+CL FVDGG +VV+GG QLED ++EFDL+++ FSS+LL
Sbjct: 361 RIFGANSMVSVSDDVICLGFVDGGVNPGASVVIGGFQLEDNLIEFDLASNKFGFSSTLLG 420
Query: 265 QGETCSD 245
+ C++
Sbjct: 421 RQTNCAN 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,420,033
Number of Sequences: 1393205
Number of extensions: 11100044
Number of successful extensions: 25921
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 24848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25848
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
