Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001673A_C01 KMC001673A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG08960.1|AF122052_1 tuber-specific and sucrose-responsive e... 47 1e-04
dbj|BAC53938.1| Myb-like protein [Nicotiana tabacum] 46 3e-04
emb|CAC33605.1| hypothetical protein [Rickettsia montanensis] 33 1.5
ref|NP_598988.1| vomeronasal 1 receptor, K1 [Mus musculus] gi|18... 32 3.4
ref|NP_360546.1| similarity to WASP, N-WASP, MENA proteins [Rick... 31 7.6
>gb|AAG08960.1|AF122052_1 tuber-specific and sucrose-responsive element binding factor
[Solanum tuberosum]
Length = 306
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Frame = -2
Query: 522 VMQEMIKKEXRSYM---QQNGMCYSHGSDDGFRNAAVKRIGISRID 394
V+Q+MI+KE +SYM +QNG+C D RNA +KRIGIS+I+
Sbjct: 264 VLQDMIRKEVKSYMSGFEQNGICMQ---TDAIRNAVIKRIGISKIE 306
>dbj|BAC53938.1| Myb-like protein [Nicotiana tabacum]
Length = 329
Score = 45.8 bits (107), Expect = 3e-04
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = -2
Query: 522 VMQEMIKKEXRSYM---QQNGMCYSHGSDDGFRNAAVKRIGISRID 394
V+Q+MI+KE R+YM + NG+C D RNA VKRIGIS+I+
Sbjct: 287 VLQDMIRKEVRNYMSGVEHNGLCMQ---TDAIRNAVVKRIGISKIE 329
>emb|CAC33605.1| hypothetical protein [Rickettsia montanensis]
Length = 602
Score = 33.5 bits (75), Expect = 1.5
Identities = 23/86 (26%), Positives = 43/86 (49%)
Frame = +1
Query: 235 KIIS*NKQGETKTAKKLRASLSKHHHFFPSLIDPHLVFLLFISSFFL*SCNLRIDSANPN 414
++++ NK+ T+T +K+ L K H F LI+ + I + + L+ +N
Sbjct: 234 QVLAKNKESNTRTIRKIDEQLYKTKHKFEELIENKERNINDIIAKLPDNEELQKIVSNLT 293
Query: 415 SFHRSVPEPIITSMRITHPILLHITP 492
+ S EPI+T+ + P+ +ITP
Sbjct: 294 NHMASTKEPILTNSSLAKPLENNITP 319
>ref|NP_598988.1| vomeronasal 1 receptor, K1 [Mus musculus]
gi|18558846|gb|AAL47960.1| vomeronasal receptor V1RK1
[Mus musculus]
Length = 295
Score = 32.3 bits (72), Expect = 3.4
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = +1
Query: 82 WSSGQRTIKSCRF--FLPFSIPRNNFQFIP*LPSHPFFPSKRVFTLYIDSPFTKIIS*NK 255
W+ + ++SC F FL I N F ++P + + K FT ++DS +++I +
Sbjct: 98 WAWLKSKLESCIFPLFLIMWII-NTFLYLPMVEN---IKGKINFT-FVDSKYSQIYCRSS 152
Query: 256 QGETKTAKKLRASLSKHHHFFPSLIDPHLVFLLFISSFFL*SCNLRIDSANPNSFHRSVP 435
Q T K L +L + D VFL+ SS ++ S R + + + SV
Sbjct: 153 QVRHHTTKSLVTALI--------IRDVLFVFLMIWSSLYMVSLLFRHNRSTRHVHSFSVS 204
Query: 436 EPIITSMRITHPILLHITPXLFLY 507
+ R TH ILL + +F Y
Sbjct: 205 LHASSEKRATHSILLLVAFFMFFY 228
>ref|NP_360546.1| similarity to WASP, N-WASP, MENA proteins [Rickettsia conorii]
gi|25503332|pir||E97813 WASP, N-WASP, MENA proteins
homolog [imported] - Rickettsia conorii (strain Malish
7) gi|15620016|gb|AAL03447.1| similarity to WASP,
N-WASP, MENA proteins [Rickettsia conorii]
Length = 520
Score = 31.2 bits (69), Expect = 7.6
Identities = 22/86 (25%), Positives = 42/86 (48%)
Frame = +1
Query: 235 KIIS*NKQGETKTAKKLRASLSKHHHFFPSLIDPHLVFLLFISSFFL*SCNLRIDSANPN 414
++++ NK+ T+T +K+ L K H F LI+ + I + + L+ +N
Sbjct: 237 QVLAKNKESNTRTIRKIDEQLYKTKHKFEELIENKERNIKDIIAKLPDNEKLQKIVSNLT 296
Query: 415 SFHRSVPEPIITSMRITHPILLHITP 492
+ S EPI+ + + P+ +ITP
Sbjct: 297 NHMASQKEPILANASLAKPLENNITP 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,506,107
Number of Sequences: 1393205
Number of extensions: 9325945
Number of successful extensions: 24559
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24423
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
