Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001672A_C01 KMC001672A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568028.1| formamidase - like protein; protein id: At4g375... 215 3e-55
pir||T04712 probable formamidase (EC 3.5.1.49) F19F18.40 - Arabi... 215 3e-55
gb|AAM64380.1| formamidase-like protein [Arabidopsis thaliana] 213 1e-54
ref|NP_568029.1| formamidase - like protein; protein id: At4g375... 208 4e-53
gb|AAK59505.1| putative formamidase [Arabidopsis thaliana] 206 2e-52
>ref|NP_568028.1| formamidase - like protein; protein id: At4g37550.1, supported by
cDNA: 23732. [Arabidopsis thaliana]
Length = 452
Score = 215 bits (548), Expect = 3e-55
Identities = 102/121 (84%), Positives = 112/121 (92%)
Frame = -2
Query: 595 SEWLVFEGISVDERGRQHFLDASVAYKRAVLNAIDYISKFGYSKEQVYLLLSCIPCEGRI 416
SEWLVFEGISVDE G+QH+LDA+VAYKRAVLNAIDY+ KFGYSKEQVYLLLSC PCEGR+
Sbjct: 331 SEWLVFEGISVDESGKQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRL 390
Query: 415 SSIVDAPNAVATLAIPTAIFDQDIRPKQNKVPIGPRLVRKPDVFKCTYDGNLPITKNPSA 236
S IVD+PNAVATLAIPTAIFDQDIRPK KVP+GPR+VRKPDV K TYDG LPITKNPS+
Sbjct: 391 SGIVDSPNAVATLAIPTAIFDQDIRPKNRKVPVGPRVVRKPDVLKSTYDGKLPITKNPSS 450
Query: 235 T 233
+
Sbjct: 451 S 451
>pir||T04712 probable formamidase (EC 3.5.1.49) F19F18.40 - Arabidopsis thaliana
gi|4468980|emb|CAB38294.1| formamidase-like protein
[Arabidopsis thaliana] gi|7270737|emb|CAB80420.1|
formamidase-like protein [Arabidopsis thaliana]
Length = 432
Score = 215 bits (548), Expect = 3e-55
Identities = 102/121 (84%), Positives = 112/121 (92%)
Frame = -2
Query: 595 SEWLVFEGISVDERGRQHFLDASVAYKRAVLNAIDYISKFGYSKEQVYLLLSCIPCEGRI 416
SEWLVFEGISVDE G+QH+LDA+VAYKRAVLNAIDY+ KFGYSKEQVYLLLSC PCEGR+
Sbjct: 311 SEWLVFEGISVDESGKQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRL 370
Query: 415 SSIVDAPNAVATLAIPTAIFDQDIRPKQNKVPIGPRLVRKPDVFKCTYDGNLPITKNPSA 236
S IVD+PNAVATLAIPTAIFDQDIRPK KVP+GPR+VRKPDV K TYDG LPITKNPS+
Sbjct: 371 SGIVDSPNAVATLAIPTAIFDQDIRPKNRKVPVGPRVVRKPDVLKSTYDGKLPITKNPSS 430
Query: 235 T 233
+
Sbjct: 431 S 431
>gb|AAM64380.1| formamidase-like protein [Arabidopsis thaliana]
Length = 452
Score = 213 bits (543), Expect = 1e-54
Identities = 101/121 (83%), Positives = 112/121 (92%)
Frame = -2
Query: 595 SEWLVFEGISVDERGRQHFLDASVAYKRAVLNAIDYISKFGYSKEQVYLLLSCIPCEGRI 416
SEWLVFEGISVDE G+QH+LDA+VAYKRAVLNAIDY+ KFGYSKEQVYLLLSC PCEGR+
Sbjct: 331 SEWLVFEGISVDESGKQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRL 390
Query: 415 SSIVDAPNAVATLAIPTAIFDQDIRPKQNKVPIGPRLVRKPDVFKCTYDGNLPITKNPSA 236
S IVD+P+AVATLAIPTAIFDQDIRPK KVP+GPR+VRKPDV K TYDG LPITKNPS+
Sbjct: 391 SGIVDSPSAVATLAIPTAIFDQDIRPKNRKVPVGPRVVRKPDVLKSTYDGKLPITKNPSS 450
Query: 235 T 233
+
Sbjct: 451 S 451
>ref|NP_568029.1| formamidase - like protein; protein id: At4g37560.1, supported by
cDNA: gi_14334653 [Arabidopsis thaliana]
gi|23297225|gb|AAN12921.1| putative formamidase
[Arabidopsis thaliana]
Length = 452
Score = 208 bits (530), Expect = 4e-53
Identities = 101/121 (83%), Positives = 109/121 (89%)
Frame = -2
Query: 595 SEWLVFEGISVDERGRQHFLDASVAYKRAVLNAIDYISKFGYSKEQVYLLLSCIPCEGRI 416
SEWLVFEGISVDE GRQH+LDA+VAYKRAVLNAIDY+ KFGYSKEQVYLLLSC PCEGRI
Sbjct: 331 SEWLVFEGISVDESGRQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRI 390
Query: 415 SSIVDAPNAVATLAIPTAIFDQDIRPKQNKVPIGPRLVRKPDVFKCTYDGNLPITKNPSA 236
S IVD+PNAVATLAIPTAIFDQDIRPK KVP G R+V+KPDV K TYDG LPITKN S+
Sbjct: 391 SGIVDSPNAVATLAIPTAIFDQDIRPKTRKVPTGARIVKKPDVMKSTYDGKLPITKNSSS 450
Query: 235 T 233
+
Sbjct: 451 S 451
>gb|AAK59505.1| putative formamidase [Arabidopsis thaliana]
Length = 452
Score = 206 bits (524), Expect = 2e-52
Identities = 100/121 (82%), Positives = 108/121 (88%)
Frame = -2
Query: 595 SEWLVFEGISVDERGRQHFLDASVAYKRAVLNAIDYISKFGYSKEQVYLLLSCIPCEGRI 416
SEWLVFEGISVDE GRQH+LDA+VAYKRAVLNAIDY+ KFGYSKEQVYLLLSC PCEGRI
Sbjct: 331 SEWLVFEGISVDESGRQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRI 390
Query: 415 SSIVDAPNAVATLAIPTAIFDQDIRPKQNKVPIGPRLVRKPDVFKCTYDGNLPITKNPSA 236
S IVD+PNAVATLAIPTAIFDQDIRPK KVP G R+V+KPDV K TYDG LPI KN S+
Sbjct: 391 SGIVDSPNAVATLAIPTAIFDQDIRPKTRKVPTGARIVKKPDVMKSTYDGKLPIIKNSSS 450
Query: 235 T 233
+
Sbjct: 451 S 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,051,608
Number of Sequences: 1393205
Number of extensions: 11969896
Number of successful extensions: 27599
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 26824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27585
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
