Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001670A_C03 KMC001670A_c03
(705 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplast precu... 95 1e-25
emb|CAD18921.1| RNA-binding protein precursor [Persea americana] 93 1e-24
pir||S15348 RNA-binding protein, 28K - spinach 91 3e-24
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplast (28RNP) 91 3e-24
emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea] 91 3e-24
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplast precursor
gi|100295|pir||S22548 ribonucleoprotein, 31K, precursor
- wood tobacco gi|19741|emb|CAA40364.1| 31kD chloroplast
ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| 31 kDa ribonucleoprotein
precursor [Nicotiana sylvestris]
Length = 315
Score = 94.7 bits (234), Expect(2) = 1e-25
Identities = 44/78 (56%), Positives = 56/78 (71%)
Frame = -3
Query: 703 ATPKEARPERPPRTFGSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMD 524
A + RPERPPRTF + +YVGN+PW +D ARLE++F EHG V +AR+V D
Sbjct: 212 AARRGERPERPPRTF-------EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYD 264
Query: 523 RETGRSRAFGFVTMSSDS 470
RETGRSR FGFVTM+S++
Sbjct: 265 RETGRSRGFGFVTMASEA 282
Score = 54.3 bits (129), Expect = 2e-06
Identities = 24/49 (48%), Positives = 36/49 (72%)
Frame = -3
Query: 622 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRAFGFVTMSS 476
++VGNLP+ VD+ L +F + G VE A ++ +R+T +SR FGFVTMS+
Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMST 186
Score = 44.3 bits (103), Expect(2) = 1e-25
Identities = 22/29 (75%), Positives = 26/29 (88%)
Frame = -1
Query: 471 ADINGAIAALDGQSLDGRTIRVSVAEGRS 385
A+++ AIA LDGQSLDGRTIRV+VAE RS
Sbjct: 282 AEMSDAIANLDGQSLDGRTIRVNVAEDRS 310
>emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 93.2 bits (230), Expect(2) = 1e-24
Identities = 45/78 (57%), Positives = 54/78 (68%)
Frame = -3
Query: 703 ATPKEARPERPPRTFGSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMD 524
A P+ AR +RPPR F + +YVGNLPW VD ARLE++F EHG V AR+V D
Sbjct: 197 AAPRGARVDRPPRAF-------EPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYD 249
Query: 523 RETGRSRAFGFVTMSSDS 470
RETGRSR FGFVTMS+ +
Sbjct: 250 RETGRSRGFGFVTMSTQT 267
Score = 57.0 bits (136), Expect = 2e-07
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = -3
Query: 622 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRAFGFVTMSS 476
++VGNLP+ VD L E+F + G VE A ++ +RET +SR FGFVTMS+
Sbjct: 123 LFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMST 171
Score = 42.0 bits (97), Expect(2) = 1e-24
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = -1
Query: 468 DINGAIAALDGQSLDGRTIRVSVAEGR 388
+++ AIAALDGQSLDGR IRV+VAE R
Sbjct: 268 ELDDAIAALDGQSLDGRAIRVNVAEDR 294
>pir||S15348 RNA-binding protein, 28K - spinach
Length = 233
Score = 91.3 bits (225), Expect(2) = 3e-24
Identities = 45/71 (63%), Positives = 52/71 (72%)
Frame = -3
Query: 682 PERPPRTFGSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSR 503
PER PR G + VYVGNLPW VDT+RLE++F EHG V +AR+V DRETGRSR
Sbjct: 137 PERAPR------GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSR 190
Query: 502 AFGFVTMSSDS 470
FGFVTMSS+S
Sbjct: 191 GFGFVTMSSES 201
Score = 58.2 bits (139), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (61%)
Frame = -3
Query: 658 GSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRAFGFVTMS 479
G G ++VGNLP+ VD+ +L IF G VE A ++ +RET RSR FGFVTMS
Sbjct: 45 GQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMS 104
Query: 478 S 476
+
Sbjct: 105 T 105
Score = 42.7 bits (99), Expect(2) = 3e-24
Identities = 19/28 (67%), Positives = 25/28 (88%)
Frame = -1
Query: 471 ADINGAIAALDGQSLDGRTIRVSVAEGR 388
+++N AIAALDGQ+LDGR +RV+VAE R
Sbjct: 201 SEVNDAIAALDGQTLDGRAVRVNVAEER 228
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplast (28RNP)
Length = 233
Score = 91.3 bits (225), Expect(2) = 3e-24
Identities = 45/71 (63%), Positives = 52/71 (72%)
Frame = -3
Query: 682 PERPPRTFGSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSR 503
PER PR G + VYVGNLPW VDT+RLE++F EHG V +AR+V DRETGRSR
Sbjct: 137 PERAPR------GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSR 190
Query: 502 AFGFVTMSSDS 470
FGFVTMSS+S
Sbjct: 191 GFGFVTMSSES 201
Score = 58.2 bits (139), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (61%)
Frame = -3
Query: 658 GSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRAFGFVTMS 479
G G ++VGNLP+ VD+ +L IF G VE A ++ +RET RSR FGFVTMS
Sbjct: 45 GQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMS 104
Query: 478 S 476
+
Sbjct: 105 T 105
Score = 42.7 bits (99), Expect(2) = 3e-24
Identities = 19/28 (67%), Positives = 25/28 (88%)
Frame = -1
Query: 471 ADINGAIAALDGQSLDGRTIRVSVAEGR 388
+++N AIAALDGQ+LDGR +RV+VAE R
Sbjct: 201 SEVNDAIAALDGQTLDGRAVRVNVAEER 228
>emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 91.3 bits (225), Expect(2) = 3e-24
Identities = 45/71 (63%), Positives = 52/71 (72%)
Frame = -3
Query: 682 PERPPRTFGSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSR 503
PER PR G + VYVGNLPW VDT+RLE++F EHG V +AR+V DRETGRSR
Sbjct: 130 PERAPR------GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSR 183
Query: 502 AFGFVTMSSDS 470
FGFVTMSS+S
Sbjct: 184 GFGFVTMSSES 194
Score = 58.2 bits (139), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (61%)
Frame = -3
Query: 658 GSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRAFGFVTMS 479
G G ++VGNLP+ VD+ +L IF G VE A ++ +RET RSR FGFVTMS
Sbjct: 38 GQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMS 97
Query: 478 S 476
+
Sbjct: 98 T 98
Score = 42.7 bits (99), Expect(2) = 3e-24
Identities = 19/28 (67%), Positives = 25/28 (88%)
Frame = -1
Query: 471 ADINGAIAALDGQSLDGRTIRVSVAEGR 388
+++N AIAALDGQ+LDGR +RV+VAE R
Sbjct: 194 SEVNDAIAALDGQTLDGRAVRVNVAEER 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,272,978
Number of Sequences: 1393205
Number of extensions: 13430179
Number of successful extensions: 44191
Number of sequences better than 10.0: 1454
Number of HSP's better than 10.0 without gapping: 40265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43908
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
