Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001669A_C01 KMC001669A_c01
(1346 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199286.1| Dreg-2 like protein; protein id: At5g44730.1 [A... 413 e-114
pir||S56690 hypothetical protein (clone AFD1) - wild oat (fragme... 108 3e-22
ref|NP_077219.1| RIKEN cDNA 2810435D12 [Mus musculus] gi|1285049... 107 6e-22
ref|XP_216417.1| similar to RIKEN cDNA 2810435D12 [Mus musculus]... 104 4e-21
ref|NP_112496.1| hypothetical protein MGC12904 [Homo sapiens] gi... 100 9e-20
>ref|NP_199286.1| Dreg-2 like protein; protein id: At5g44730.1 [Arabidopsis thaliana]
gi|2660676|gb|AAC79147.1| Dreg-2 like protein
[Arabidopsis thaliana] gi|9758377|dbj|BAB08826.1| Dreg-2
like protein [Arabidopsis thaliana]
Length = 255
Score = 413 bits (1061), Expect = e-114
Identities = 194/251 (77%), Positives = 227/251 (90%), Gaps = 1/251 (0%)
Frame = -2
Query: 1069 MSILARLRCVTVDVTGTLMAYKGELGDYYCMAAKAAGHPCPDYKRVHEGFKLAYKDMAKK 890
+S+L++LRC+TVDVTGTL+AYKGELGDYYCMAAKA G PCPDYKRVHEGFKLAY DMA+K
Sbjct: 3 VSLLSKLRCITVDVTGTLIAYKGELGDYYCMAAKAIGLPCPDYKRVHEGFKLAYTDMAQK 62
Query: 889 YPCFGFGAKMPNIVWWKTCVRDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSR 710
YPCFGF AKMPNIVWWKTCVRDSFV+AGYEYDEETFEKIFRRIY++FGS+APY+VF DS+
Sbjct: 63 YPCFGFHAKMPNIVWWKTCVRDSFVKAGYEYDEETFEKIFRRIYSTFGSAAPYSVFQDSQ 122
Query: 709 PFLRWLRGKGVKVGLVSNAEYRYPDVILPAMGINEGSEWDFGVFSGLEGVEKPNPKIYEI 530
PFLRW R KG+ VGLVSNAEYRY +VILP+ G+++ +EWDFGVFSG+EG+EKP+P+I+ +
Sbjct: 123 PFLRWARRKGLIVGLVSNAEYRYQEVILPSFGLSK-AEWDFGVFSGIEGIEKPDPRIFTL 181
Query: 529 ALERAG-NIKPEETLHIGDSMRKDYEPAKSIGMHALLLDRFKTPDADEWRKSGAVVLPDL 353
ALERAG NI PEE LHIGDSMRKDY PAKSIGMHALL+DRFKT A +W ++GA+VLPDL
Sbjct: 182 ALERAGNNIAPEEVLHIGDSMRKDYVPAKSIGMHALLVDRFKTEAAKDWIEAGAIVLPDL 241
Query: 352 EATQEWLSSEK 320
A Q+ L S+K
Sbjct: 242 VAVQQLLESDK 252
>pir||S56690 hypothetical protein (clone AFD1) - wild oat (fragment)
gi|726471|gb|AAA76739.1| putative ORF1
Length = 89
Score = 108 bits (269), Expect = 3e-22
Identities = 50/65 (76%), Positives = 56/65 (85%)
Frame = -2
Query: 523 ERAGNIKPEETLHIGDSMRKDYEPAKSIGMHALLLDRFKTPDADEWRKSGAVVLPDLEAT 344
E AGNI PEE LHIGD+MRKDY PA+SIGMHALLLDRFKT DA+ W++SGA VLPDLEA
Sbjct: 1 EMAGNIAPEEALHIGDTMRKDYVPARSIGMHALLLDRFKTADAESWKQSGAPVLPDLEAA 60
Query: 343 QEWLS 329
Q WL+
Sbjct: 61 QAWLT 65
>ref|NP_077219.1| RIKEN cDNA 2810435D12 [Mus musculus] gi|12850490|dbj|BAB28741.1|
unnamed protein product [Mus musculus]
gi|13097531|gb|AAH03491.1| RIKEN cDNA 2810435D12 gene
[Mus musculus] gi|29290603|emb|CAD83061.1| bN189G18.4.1
(novel protein (2810435D12Rik), variant 1) [Mus musculus]
Length = 251
Score = 107 bits (266), Expect = 6e-22
Identities = 66/212 (31%), Positives = 113/212 (53%)
Frame = -2
Query: 1054 RLRCVTVDVTGTLMAYKGELGDYYCMAAKAAGHPCPDYKRVHEGFKLAYKDMAKKYPCFG 875
++R +T DV TL+ + +G+ Y A+A G D V + F+ AY+ + +P +G
Sbjct: 6 QMRLLTWDVKDTLIKLRRPVGEEYASKARAHGVVVEDIT-VEQAFRQAYRAQSHNFPNYG 64
Query: 874 FGAKMPNIVWWKTCVRDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSRPFLRW 695
+ + WWK V +F AG D + + ++Y F S + V + L+
Sbjct: 65 LSRGLTSRQWWKDVVLHTFRLAGVP-DAQAMTPVADQLYEDFSSPFTWQVLEGAEMTLKG 123
Query: 694 LRGKGVKVGLVSNAEYRYPDVILPAMGINEGSEWDFGVFSGLEGVEKPNPKIYEIALERA 515
R +G+K+ +VSN + R D IL +G+ E +DF + S G KP+P+I+ AL+RA
Sbjct: 124 CRKRGLKLAVVSNFDRRLED-ILTGLGLRE--HFDFVLTSEAVGCPKPDPRIFREALQRA 180
Query: 514 GNIKPEETLHIGDSMRKDYEPAKSIGMHALLL 419
++P H+GDS DY+ ++++GMH+ L+
Sbjct: 181 C-VEPAVAAHVGDSYLCDYQGSQAVGMHSFLV 211
>ref|XP_216417.1| similar to RIKEN cDNA 2810435D12 [Mus musculus] [Rattus norvegicus]
Length = 251
Score = 104 bits (259), Expect = 4e-21
Identities = 64/212 (30%), Positives = 112/212 (52%)
Frame = -2
Query: 1054 RLRCVTVDVTGTLMAYKGELGDYYCMAAKAAGHPCPDYKRVHEGFKLAYKDMAKKYPCFG 875
++R +T DV TL+ + +G+ Y A+A G + V + F+ A++ + +P +G
Sbjct: 6 QMRLLTWDVKDTLIKVRRPVGEEYASKARAHG-VLVEATAVEQAFRQAFRAQSHSFPNYG 64
Query: 874 FGAKMPNIVWWKTCVRDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSRPFLRW 695
+ + WW V +F AG D + + ++Y F S + V + L+
Sbjct: 65 LSLGLTSRQWWMDVVLHTFRLAGVP-DAQAMAPVADQLYEDFSSPFAWRVLEGAETTLKG 123
Query: 694 LRGKGVKVGLVSNAEYRYPDVILPAMGINEGSEWDFGVFSGLEGVEKPNPKIYEIALERA 515
R +G+K+ +VSN + R D IL +G+ E +DF + S G KP+P+I+ AL+ A
Sbjct: 124 CRKRGMKLAVVSNFDRRLED-ILTGLGLRE--HFDFVLTSEAVGCPKPDPRIFREALQLA 180
Query: 514 GNIKPEETLHIGDSMRKDYEPAKSIGMHALLL 419
++P H+GDS R DY+ A+++GMH+ L+
Sbjct: 181 C-VEPSAAAHVGDSYRCDYQGARAVGMHSFLV 211
>ref|NP_112496.1| hypothetical protein MGC12904 [Homo sapiens]
gi|13477173|gb|AAH05048.1|AAH05048 Similar to RIKEN cDNA
2810435D12 gene [Homo sapiens] gi|22749572|gb|AAH31878.1|
similar to hypothetical protein MGC12904 [Homo sapiens]
Length = 251
Score = 99.8 bits (247), Expect = 9e-20
Identities = 61/212 (28%), Positives = 112/212 (52%)
Frame = -2
Query: 1054 RLRCVTVDVTGTLMAYKGELGDYYCMAAKAAGHPCPDYKRVHEGFKLAYKDMAKKYPCFG 875
++R +T DV TL+ + LG+ Y A+A G + + +GF+ AY+ + +P +G
Sbjct: 6 QIRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEV-EPSALEQGFRQAYRAQSHSFPNYG 64
Query: 874 FGAKMPNIVWWKTCVRDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSRPFLRW 695
+ + WW V +F AG + D + I ++Y F + V + LR
Sbjct: 65 LSHGLTSRQWWLDVVLQTFHLAGVQ-DAQAVAPIAEQLYKDFSHPCTWQVLDGAEDTLRE 123
Query: 694 LRGKGVKVGLVSNAEYRYPDVILPAMGINEGSEWDFGVFSGLEGVEKPNPKIYEIALERA 515
R +G+++ ++SN + R + IL +G+ E +DF + S G KP+P+I++ AL R
Sbjct: 124 CRTRGLRLAVISNFDRRL-EGILGGLGLRE--HFDFVLTSEAAGWPKPDPRIFQEAL-RL 179
Query: 514 GNIKPEETLHIGDSMRKDYEPAKSIGMHALLL 419
+++P H+GD+ DY+ +++GMH+ L+
Sbjct: 180 AHMEPVVAAHVGDNYLCDYQGPRAVGMHSFLV 211
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,224,636,989
Number of Sequences: 1393205
Number of extensions: 29160443
Number of successful extensions: 138349
Number of sequences better than 10.0: 227
Number of HSP's better than 10.0 without gapping: 86845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131571
length of database: 448,689,247
effective HSP length: 127
effective length of database: 271,752,212
effective search space used: 87232460052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
