Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001668A_C01 KMC001668A_c01
(392 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197507.1| putative protein; protein id: At5g20070.1, supp... 91 3e-18
dbj|BAA83555.1| hypothetical protein [Oryza sativa (japonica cul... 77 7e-14
ref|NP_703487.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.39
ref|NP_419085.1| MutT/nudix family protein [Caulobacter crescent... 33 0.66
gb|AAB47544.1| MigA [Dictyostelium discoideum] 32 1.5
>ref|NP_197507.1| putative protein; protein id: At5g20070.1, supported by cDNA:
gi_15146277, supported by cDNA: gi_19699163 [Arabidopsis
thaliana] gi|15146278|gb|AAK83622.1|
AT5g20070/F28I16_220 [Arabidopsis thaliana]
gi|19699164|gb|AAL90948.1| AT5g20070/F28I16_220
[Arabidopsis thaliana]
Length = 438
Score = 90.9 bits (224), Expect = 3e-18
Identities = 46/71 (64%), Positives = 57/71 (79%), Gaps = 1/71 (1%)
Frame = -2
Query: 391 AKVEQMCKGVEKTHSLTTDFNVESGELAPMFVPGPFAIAHHLISSWAFPDQNVNGVECHS 212
AKVEQ+CKGVE++ SL+TDFN+ESGELAPMF+PGPFAIAHHLIS+W N + HS
Sbjct: 372 AKVEQICKGVERSQSLSTDFNLESGELAPMFIPGPFAIAHHLISAWV----NQAPDDVHS 427
Query: 211 KHPSG-SVSNL 182
K +G S+S+L
Sbjct: 428 KQQAGVSLSSL 438
>dbj|BAA83555.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 276
Score = 76.6 bits (187), Expect = 7e-14
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = -2
Query: 388 KVEQMCKGVEKTHSLTTDFNVESGELAPMFVPGPFAIAHHLISSWAF 248
KV Q+CKGVEK S++ D +ES E APMFVPGP+AIAHHLISSWAF
Sbjct: 217 KVNQICKGVEKRQSISADLKIESEEPAPMFVPGPYAIAHHLISSWAF 263
>ref|NP_703487.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504628|emb|CAD51507.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 867
Score = 34.3 bits (77), Expect = 0.39
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 3 DKFGHLSIHCTSKSSI-INTYQSNFNKKITFL*TLQTSENHNNNKLVHPK 149
+K+ +L IH K +I INT + N ++ L TLQ + N+NNN H K
Sbjct: 105 NKYIYLYIHKNQKKNIFINTKKLNILQQNIILYTLQNNNNNNNNSYKHNK 154
>ref|NP_419085.1| MutT/nudix family protein [Caulobacter crescentus CB15]
gi|25397199|pir||A87282 MutT/nudix family protein
[imported] - Caulobacter crescentus
gi|13421401|gb|AAK22253.1| MutT/nudix family protein
[Caulobacter crescentus CB15]
Length = 313
Score = 33.5 bits (75), Expect = 0.66
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = -2
Query: 319 GELAPMFVPGPFAIAHHLISSWA 251
GEL +F P P AIAH LI +WA
Sbjct: 288 GELDGLFAPPPLAIAHQLIKAWA 310
>gb|AAB47544.1| MigA [Dictyostelium discoideum]
Length = 813
Score = 32.3 bits (72), Expect = 1.5
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 3/56 (5%)
Frame = +3
Query: 33 TSKSSIINTYQSNFNKKITFL*TLQTSENHNNNKLV---HPKRPCKQKFSHSYKFD 191
T+ ++IIN +N NK QT N+N+NK++ P+ P F +S+ FD
Sbjct: 598 TNNNNIINNNNNNNNK--------QTQSNNNDNKILKRYQPRPPQSILFEYSFDFD 645
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,977,623
Number of Sequences: 1393205
Number of extensions: 7064702
Number of successful extensions: 15240
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15232
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
