Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001664A_C01 KMC001664A_c01
(937 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85638.1| succinate dehydrogenase subunit 4 [Pisum sativum... 298 6e-80
gb|AAK77856.1|AF362737_1 succinate dehydrogenase subunit 4 [Gymn... 84 2e-15
gb|AAK77855.1|AF362736_1 succinate dehydrogenase subunit 4 [Podo... 84 2e-15
gb|AAK77854.1|AF362735_1 succinate dehydrogenase subunit 4 [Lyco... 84 3e-15
gb|AAK77130.1|AF363614_1 succinate dehydrogenase subunit 4 [Goss... 80 3e-14
>dbj|BAB85638.1| succinate dehydrogenase subunit 4 [Pisum sativum]
gi|19032304|dbj|BAB85639.1| succinate dehydrogenase
subunit 4 [Pisum sativum]
Length = 223
Score = 298 bits (764), Expect = 6e-80
Identities = 159/223 (71%), Positives = 182/223 (81%), Gaps = 3/223 (1%)
Frame = -1
Query: 904 MQSMSLTLTKRLSN-SKPLCRFSSNLAAY-STTTTSPPPPSPPISAAANGIASPPSSLFT 731
MQS+SL L KRLS+ SKP R SSNL A+ STT++SP PPSPPISAA N S ++L T
Sbjct: 1 MQSLSLRLGKRLSDASKPHWRISSNLIAHASTTSSSPSPPSPPISAATNDTTSALNNLLT 60
Query: 730 GPWSATQTRGITLSGSDVRVGNLIENRGRAYEVLKSYQSHEGMGKAASKVLPHSVAGYAT 551
PW A+QTRG+T SGSDVRVGNL ENRGRAYEVLK Y SHEG GKAA KV PH+VAGYAT
Sbjct: 61 APWFASQTRGLTFSGSDVRVGNLFENRGRAYEVLKLYNSHEGTGKAAIKVPPHTVAGYAT 120
Query: 550 -AATAAGEIQSKVRSSGLRSQGPMSKREQLLKVSAVASLLLLYPNAYSLLVANCFVFWHT 374
AAT +I+ K R+SGLR+QG +KREQLLK++A LLL+YPNAYSLL AN FVFWH
Sbjct: 121 VAATTEDDIKRKERNSGLRNQGLKTKREQLLKITAAVPLLLVYPNAYSLLAANFFVFWHI 180
Query: 373 HAGIEEILADYVHHEVTREFVSISLRLFLIIAMKDVFLNLIFV 245
+AGIEEILADYVHHE+TREF+ ISLRLFLIIA+KDVFLN +FV
Sbjct: 181 NAGIEEILADYVHHEMTREFIFISLRLFLIIAIKDVFLNFVFV 223
>gb|AAK77856.1|AF362737_1 succinate dehydrogenase subunit 4 [Gymnocladus dioica]
Length = 100
Score = 84.3 bits (207), Expect = 2e-15
Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Frame = -1
Query: 520 KVRSSGLRSQGPMSKREQLLKVSAVA---SLLLLYPNAYSLLVANCFVFWHTHAGIEEIL 350
K R+SGLR++ +KR L K A L+++Y S + N +FWH + GIEEI+
Sbjct: 2 KERNSGLRNESSKTKRTGLFKRITAAFPLPLIIIYKKVSSTFLPNLSLFWHINEGIEEIM 61
Query: 349 ADYVHHEVTREFVSISLRLFLIIAMKDVFLNLI 251
ADYVH E+TR + + LRLF +I +KDVFL+L+
Sbjct: 62 ADYVHQEMTRNLILVYLRLFFLIVIKDVFLSLV 94
>gb|AAK77855.1|AF362736_1 succinate dehydrogenase subunit 4 [Podophyllum peltatum]
Length = 100
Score = 84.3 bits (207), Expect = 2e-15
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Frame = -1
Query: 520 KVRSSGLRSQGPMSKREQLLKVSAVASLL---LLYPNAYSLLVANCFVFWHTHAGIEEIL 350
K R SGLR++ +KR L K A LL ++Y S + N VFWH + GIEEI+
Sbjct: 2 KERISGLRNESSKTKRTGLFKRITAAFLLPLIIIYKKVSSTFLPNLSVFWHINEGIEEIM 61
Query: 349 ADYVHHEVTREFVSISLRLFLIIAMKDVFLNLI 251
AD+VH E+TR + + LRLFL+I +KDVFL+L+
Sbjct: 62 ADHVHQEMTRNLILVYLRLFLLIVIKDVFLSLV 94
>gb|AAK77854.1|AF362735_1 succinate dehydrogenase subunit 4 [Lycopersicon esculentum]
Length = 100
Score = 84.0 bits (206), Expect = 3e-15
Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Frame = -1
Query: 508 SGLRSQGPMSKREQLLKVSAVASLL---LLYPNAYSLLVANCFVFWHTHAGIEEILADYV 338
SGLR++ +KR L + A LL ++Y S + N +FWH + GIEEI+ADYV
Sbjct: 6 SGLRNESSKTKRTGLFQRITAAFLLPLIIIYKKVSSTFLLNLSLFWHINEGIEEIMADYV 65
Query: 337 HHEVTREFVSISLRLFLIIAMKDVFLNLIF 248
H E+TR ++ + LRLFL+I +KDVFL+L+F
Sbjct: 66 HQEMTRNWILVYLRLFLLIVIKDVFLSLVF 95
>gb|AAK77130.1|AF363614_1 succinate dehydrogenase subunit 4 [Gossypium hirsutum]
Length = 100
Score = 80.5 bits (197), Expect = 3e-14
Identities = 39/93 (41%), Positives = 60/93 (63%), Gaps = 3/93 (3%)
Frame = -1
Query: 520 KVRSSGLRSQGPMSKREQLLKVSAVA---SLLLLYPNAYSLLVANCFVFWHTHAGIEEIL 350
K R+ GL+++ +KR L + A L+++Y S + N F+FWH + GIEEI+
Sbjct: 2 KERNGGLKNESSKTKRIGLFQRITAAFPLPLIIIYKKVSSTFLPNLFLFWHINEGIEEIM 61
Query: 349 ADYVHHEVTREFVSISLRLFLIIAMKDVFLNLI 251
AD+VH E+TR + + LRLF +I +KDVFL+L+
Sbjct: 62 ADHVHQEMTRNLILVYLRLFFLIVIKDVFLSLV 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 821,301,952
Number of Sequences: 1393205
Number of extensions: 20783215
Number of successful extensions: 311195
Number of sequences better than 10.0: 3762
Number of HSP's better than 10.0 without gapping: 101138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207344
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52137106016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
