Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001660A_C01 KMC001660A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG09549.1|AC011810_8 Hypothetical Protein [Arabidopsis thali... 107 1e-22
ref|NP_172805.1| hypothetical protein; protein id: At1g13480.1 [... 107 1e-22
ref|NP_172809.1| hypothetical protein; protein id: At1g13520.1 [... 103 1e-21
pir||D86268 F13B4.3 protein - Arabidopsis thaliana gi|9802752|gb... 103 1e-21
ref|NP_172807.1| hypothetical protein; protein id: At1g13500.1 [... 101 7e-21
>gb|AAG09549.1|AC011810_8 Hypothetical Protein [Arabidopsis thaliana]
Length = 368
Score = 107 bits (266), Expect = 1e-22
Identities = 52/125 (41%), Positives = 80/125 (63%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 VNVDAVVPKEVVVIAGWEAVMDRMDVAEGLLWFNSFNHVGEKNSVGLSTAIVERMKWEQE 383
V VD V E V + G E + R D +G++WF+ + +GL + +VERMKWE+E
Sbjct: 245 VVVDVDVETESVKLEGQETNL-REDSGDGVVWFSVLRDEKDDKKIGLGSVVVERMKWEEE 303
Query: 382 RVGWIG--GKENQVRVVKSFEG-TNGWKKFGCYVLVESFVVKRLDGSIVLNYAFKHSHQL 212
R GW+ G+ + ++ + FEG ++ WK + CYVL+ESF + R+DGS+VL Y F+H +L
Sbjct: 304 RFGWLNEAGERSNIKRSERFEGGSSHWKSYRCYVLIESFELTRMDGSLVLTYEFRHVDKL 363
Query: 211 RSKWE 197
+SKW+
Sbjct: 364 KSKWD 368
>ref|NP_172805.1| hypothetical protein; protein id: At1g13480.1 [Arabidopsis
thaliana]
Length = 387
Score = 107 bits (266), Expect = 1e-22
Identities = 52/125 (41%), Positives = 80/125 (63%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 VNVDAVVPKEVVVIAGWEAVMDRMDVAEGLLWFNSFNHVGEKNSVGLSTAIVERMKWEQE 383
V VD V E V + G E + R D +G++WF+ + +GL + +VERMKWE+E
Sbjct: 264 VVVDVDVETESVKLEGQETNL-REDSGDGVVWFSVLRDEKDDKKIGLGSVVVERMKWEEE 322
Query: 382 RVGWIG--GKENQVRVVKSFEG-TNGWKKFGCYVLVESFVVKRLDGSIVLNYAFKHSHQL 212
R GW+ G+ + ++ + FEG ++ WK + CYVL+ESF + R+DGS+VL Y F+H +L
Sbjct: 323 RFGWLNEAGERSNIKRSERFEGGSSHWKSYRCYVLIESFELTRMDGSLVLTYEFRHVDKL 382
Query: 211 RSKWE 197
+SKW+
Sbjct: 383 KSKWD 387
>ref|NP_172809.1| hypothetical protein; protein id: At1g13520.1 [Arabidopsis
thaliana]
Length = 387
Score = 103 bits (257), Expect = 1e-21
Identities = 51/124 (41%), Positives = 77/124 (61%), Gaps = 2/124 (1%)
Frame = -1
Query: 562 VNVDAVVPKEVVVIAGWEAVMDRMDVAEGLLWFNSFNHVGEKNSVGLSTAIVERMKWEQE 383
V VD V +VV + G E + R G +WF+ + +GL + +VERMKWE+E
Sbjct: 265 VVVDVDVETQVVKLEGQETI-SRETSGGGFVWFSVLGDERQDKKIGLGSVVVERMKWEEE 323
Query: 382 RVGWIG-GKENQVRVVKSFEG-TNGWKKFGCYVLVESFVVKRLDGSIVLNYAFKHSHQLR 209
R GW+ G+ + ++ + FEG ++ WK + C VL+ESF +KR+DGS+VL Y F H +L+
Sbjct: 324 RFGWLNNGERSNIKRSERFEGGSSHWKSYRCLVLIESFELKRMDGSLVLTYEFTHVDKLK 383
Query: 208 SKWE 197
SKW+
Sbjct: 384 SKWD 387
>pir||D86268 F13B4.3 protein - Arabidopsis thaliana
gi|9802752|gb|AAF99821.1|AC027134_3 Hypothetical protein
[Arabidopsis thaliana]
Length = 773
Score = 103 bits (257), Expect = 1e-21
Identities = 51/124 (41%), Positives = 77/124 (61%), Gaps = 2/124 (1%)
Frame = -1
Query: 562 VNVDAVVPKEVVVIAGWEAVMDRMDVAEGLLWFNSFNHVGEKNSVGLSTAIVERMKWEQE 383
V VD V +VV + G E + R G +WF+ + +GL + +VERMKWE+E
Sbjct: 651 VVVDVDVETQVVKLEGQETI-SRETSGGGFVWFSVLGDERQDKKIGLGSVVVERMKWEEE 709
Query: 382 RVGWIG-GKENQVRVVKSFEG-TNGWKKFGCYVLVESFVVKRLDGSIVLNYAFKHSHQLR 209
R GW+ G+ + ++ + FEG ++ WK + C VL+ESF +KR+DGS+VL Y F H +L+
Sbjct: 710 RFGWLNNGERSNIKRSERFEGGSSHWKSYRCLVLIESFELKRMDGSLVLTYEFTHVDKLK 769
Query: 208 SKWE 197
SKW+
Sbjct: 770 SKWD 773
Score = 87.4 bits (215), Expect = 1e-16
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Frame = -1
Query: 562 VNVDAVVPKEVVVIAGWEAVMDRMDV-AEGLLWFNSFNHVGEKNSVGLSTAIVERMKWEQ 386
V VD V EVV + G + V ++G++WF V E +G+ + ++ERMKWE+
Sbjct: 263 VIVDVEVETEVVKLEGENIGRETKGVNSDGVVWFG----VSETQKIGIGSVVLERMKWEE 318
Query: 385 ERVGWIG-GKE--NQVRVVKSFEGTNG-WKKFGCYVLVESFVVKRLDGSIVLNYAFKHSH 218
ER GW G E + ++ + FEG WK + CYVLVE+F +K+ DGS+VL Y F+H
Sbjct: 319 ERFGWSKKGNELKSSIKRTEKFEGGGPQWKSYRCYVLVETFELKKTDGSLVLTYEFRHVD 378
Query: 217 QLRS 206
+L++
Sbjct: 379 KLKN 382
>ref|NP_172807.1| hypothetical protein; protein id: At1g13500.1 [Arabidopsis
thaliana]
Length = 386
Score = 101 bits (251), Expect = 7e-21
Identities = 53/127 (41%), Positives = 75/127 (58%), Gaps = 5/127 (3%)
Frame = -1
Query: 562 VNVDAVVPKEVVVIAGWEAVMDRMDV-AEGLLWFNSFNHVGEKNSVGLSTAIVERMKWEQ 386
V VD V EVV + G + V ++G++WFN+ + +GL + ++ERMKWE+
Sbjct: 264 VVVDVEVETEVVKLEGERIARETQGVNSDGVVWFNASGN----EKIGLGSVVLERMKWEE 319
Query: 385 ERVGWIGGKENQVRVVKSFEGTNG----WKKFGCYVLVESFVVKRLDGSIVLNYAFKHSH 218
ER GW+ Q +K E G WK + CYVLVE+F +KR DGS+VL Y FKH
Sbjct: 320 ERFGWLNKGYEQRSSIKRTERFEGGGPYWKSYRCYVLVETFELKRTDGSLVLTYEFKHVD 379
Query: 217 QLRSKWE 197
+L+SKW+
Sbjct: 380 KLKSKWD 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,164,395
Number of Sequences: 1393205
Number of extensions: 10982012
Number of successful extensions: 38502
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 35321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38284
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
