Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001657A_C01 KMC001657A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD79700.1| putative glyceraldehydes 3-phosphate dehydrogena... 80 2e-14
emb|CAD41404.1| OJ000223_09.16 [Oryza sativa (japonica cultivar-... 80 2e-14
sp|P17878|G3PC_MESCR Glyceraldehyde 3-phosphate dehydrogenase, c... 80 3e-14
gb|AAB07758.1| glyceraldehyde 3-phosphate dehydrogenase 79 4e-14
pir||S69185 glyceraldehyde-3-phosphate dehydrogenase (phosphoryl... 79 4e-14
>emb|CAD79700.1| putative glyceraldehydes 3-phosphate dehydrogenase [Oryza sativa
(indica cultivar-group)]
Length = 385
Score = 80.1 bits (196), Expect = 2e-14
Identities = 40/46 (86%), Positives = 44/46 (94%)
Frame = -3
Query: 619 VSVVDLTVRLEKAASYEQIQAAIMEESEGKLKGILGYIEEDVVSTD 482
VSVVDLTVRLEK ASY+QI+AAI EESEGKLKGILGY+EED+VSTD
Sbjct: 290 VSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTD 335
>emb|CAD41404.1| OJ000223_09.16 [Oryza sativa (japonica cultivar-group)]
Length = 337
Score = 80.1 bits (196), Expect = 2e-14
Identities = 40/46 (86%), Positives = 44/46 (94%)
Frame = -3
Query: 619 VSVVDLTVRLEKAASYEQIQAAIMEESEGKLKGILGYIEEDVVSTD 482
VSVVDLTVRLEK ASY+QI+AAI EESEGKLKGILGY+EED+VSTD
Sbjct: 242 VSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTD 287
>sp|P17878|G3PC_MESCR Glyceraldehyde 3-phosphate dehydrogenase, cytosolic
gi|99513|pir||A35080 glyceraldehyde-3-phosphate
dehydrogenase (phosphorylating) (EC 1.2.1.12) - common
ice plant gi|167260|gb|AAA33031.1|
NAD-glyceraldehyde-3-phosphate dehydrogenase
gi|167264|gb|AAA33033.1| glyceraldehyde-3-phosphate
dehydrogenase (EC 1.2.1.12)
Length = 337
Score = 79.7 bits (195), Expect = 3e-14
Identities = 40/46 (86%), Positives = 44/46 (94%)
Frame = -3
Query: 619 VSVVDLTVRLEKAASYEQIQAAIMEESEGKLKGILGYIEEDVVSTD 482
VSVVDLTVR+EKAASYEQI+AAI EESEGKLKGILGY E+D+VSTD
Sbjct: 242 VSVVDLTVRIEKAASYEQIKAAIKEESEGKLKGILGYTEDDLVSTD 287
>gb|AAB07758.1| glyceraldehyde 3-phosphate dehydrogenase
Length = 300
Score = 79.3 bits (194), Expect = 4e-14
Identities = 41/46 (89%), Positives = 42/46 (91%)
Frame = -3
Query: 619 VSVVDLTVRLEKAASYEQIQAAIMEESEGKLKGILGYIEEDVVSTD 482
VSVVDLTVRLEK ASYE IQAAI EESEGKLKGILGY E+DVVSTD
Sbjct: 230 VSVVDLTVRLEKEASYEDIQAAIKEESEGKLKGILGYTEDDVVSTD 275
>pir||S69185 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC
1.2.1.12) - potato (fragment)
Length = 300
Score = 79.3 bits (194), Expect = 4e-14
Identities = 41/46 (89%), Positives = 42/46 (91%)
Frame = -3
Query: 619 VSVVDLTVRLEKAASYEQIQAAIMEESEGKLKGILGYIEEDVVSTD 482
VSVVDLTVRLEK ASYE IQAAI EESEGKLKGILGY E+DVVSTD
Sbjct: 230 VSVVDLTVRLEKEASYEDIQAAIKEESEGKLKGILGYTEDDVVSTD 275
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,362,266
Number of Sequences: 1393205
Number of extensions: 10613813
Number of successful extensions: 24102
Number of sequences better than 10.0: 1172
Number of HSP's better than 10.0 without gapping: 23486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24061
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
