Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001656A_C01 KMC001656A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565225.1| Expressed protein; protein id: At1g79975.1, sup... 87 3e-16
gb|AAG52261.1|AC011717_29 unknown protein; 19658-19089 [Arabidop... 86 3e-16
gb|AAH41757.1| Similar to chromosome 20 open reading frame 169 [... 52 9e-06
ref|XP_215921.1| similar to chromosome 20 open reading frame 169... 51 1e-05
dbj|BAB24089.1| unnamed protein product [Mus musculus] 51 2e-05
>ref|NP_565225.1| Expressed protein; protein id: At1g79975.1, supported by cDNA:
7260. [Arabidopsis thaliana] gi|25373347|pir||B96831
hypothetical protein F18B13.6 [imported] - Arabidopsis
thaliana gi|5902377|gb|AAD55479.1|AC009322_19 Unknown
protein [Arabidopsis thaliana]
gi|13877733|gb|AAK43944.1|AF370129_1 unknown protein
[Arabidopsis thaliana] gi|21594734|gb|AAM66038.1|
unknown [Arabidopsis thaliana]
gi|25054959|gb|AAN71954.1| unknown protein [Arabidopsis
thaliana]
Length = 152
Score = 86.7 bits (213), Expect = 3e-16
Identities = 39/54 (72%), Positives = 43/54 (79%)
Frame = -1
Query: 667 IHLFICIVYGGWPSSIAWWAVNVAGFAVMALLGECLCIRRELREIPITRFRSIV 506
IHLF CI+YGGWPSS+AWW VN G AVMALL E LCI+RE REIP+ RF S V
Sbjct: 99 IHLFFCIMYGGWPSSMAWWVVNGTGLAVMALLAEYLCIKREQREIPMDRFHSRV 152
>gb|AAG52261.1|AC011717_29 unknown protein; 19658-19089 [Arabidopsis thaliana]
Length = 157
Score = 86.3 bits (212), Expect = 3e-16
Identities = 38/52 (73%), Positives = 42/52 (80%)
Frame = -1
Query: 667 IHLFICIVYGGWPSSIAWWAVNVAGFAVMALLGECLCIRRELREIPITRFRS 512
IHLF CI+YGGWPSS+AWW VN G AVMALL E LCI+RE REIP+ RF S
Sbjct: 99 IHLFFCIMYGGWPSSMAWWVVNGTGLAVMALLAEYLCIKREQREIPMDRFHS 150
>gb|AAH41757.1| Similar to chromosome 20 open reading frame 169 [Xenopus laevis]
Length = 156
Score = 51.6 bits (122), Expect = 9e-06
Identities = 23/47 (48%), Positives = 32/47 (67%), Gaps = 1/47 (2%)
Frame = -1
Query: 664 HLFICIVYGGW-PSSIAWWAVNVAGFAVMALLGECLCIRRELREIPI 527
HLF C +Y P + WW +N+ A+MA++GE LC+R ELREIP+
Sbjct: 102 HLFGCWIYTSHLPYTFTWWLLNLVCIALMAVIGEYLCMRTELREIPL 148
>ref|XP_215921.1| similar to chromosome 20 open reading frame 169; similar to RIKEN
cDNA 2610042O14 gene (M. musculus) [Homo sapiens]
[Rattus norvegicus] gi|12833500|dbj|BAB22547.1| unnamed
protein product [Mus musculus]
gi|26344590|dbj|BAC35944.1| unnamed protein product [Mus
musculus]
Length = 156
Score = 51.2 bits (121), Expect = 1e-05
Identities = 22/48 (45%), Positives = 33/48 (67%), Gaps = 1/48 (2%)
Frame = -1
Query: 664 HLFICIVYGG-WPSSIAWWAVNVAGFAVMALLGECLCIRRELREIPIT 524
HL C +Y +PS++ WW V A+MA++GE LC+R EL+EIP++
Sbjct: 102 HLLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRTELKEIPLS 149
>dbj|BAB24089.1| unnamed protein product [Mus musculus]
Length = 156
Score = 50.8 bits (120), Expect = 2e-05
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = -1
Query: 664 HLFICIVYGG-WPSSIAWWAVNVAGFAVMALLGECLCIRRELREIPIT 524
HL C +Y +PS++ WW V A+MA++GE LC+R EL+E+P++
Sbjct: 102 HLLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRTELKEVPLS 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,459,142
Number of Sequences: 1393205
Number of extensions: 11262996
Number of successful extensions: 27061
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27045
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
