Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001655A_C01 KMC001655A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans] 38 0.075
pir||E22845 hypothetical protein 4 - Trypanosoma brucei mitochon... 34 1.1
ref|NP_701228.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.4
gb|AAA62273.1| ORF2 33 1.4
pir||T29720 hypothetical protein K11G9.5 - Caenorhabditis elegans 32 3.1
>gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans]
Length = 212
Score = 37.7 bits (86), Expect = 0.075
Identities = 37/142 (26%), Positives = 57/142 (40%)
Frame = -2
Query: 504 FFYLIFF*IMISKINL*H*PKIFHCQQFMYSLFSTYF*FQFLILHICICSIKDFSLLGEE 325
FF+++F + I+ F F+ LF F F+ +L + + DF L
Sbjct: 34 FFFVVFLFVFIT----------FWYNYFL--LFFLCFLFKCFVLLDLLFLLFDFELCLLY 81
Query: 324 MVFYYNFDGFLAF*CRQKSLDFIHIIMFDILFVCLCFFSFGSFKCMGILRAIYVIPSFI* 145
+F FL F C L F+ + F L CL FFSF F + ++ + + F
Sbjct: 82 CLFLMFMCFFLLFCCLDFFLYFVFLGFFYFLMYCLFFFSFFDFVFLCVVFCCFFVFCFYG 141
Query: 144 C*LNLHN**LIRSYINLFCRYI 79
C L + NL C Y+
Sbjct: 142 C--------LFFYFFNLDCVYL 155
Score = 32.3 bits (72), Expect = 3.1
Identities = 26/82 (31%), Positives = 34/82 (40%)
Frame = -3
Query: 458 YNIDPKYSIVNNSCTLFFLLIFNFNFSFYIFVFVVLKIFLF*ERRWFFIIILMGFLHFNA 279
+N+D Y C FFL F F F FVF V+ +F F FF+++L L+
Sbjct: 148 FNLDCVYL-----CWRFFLCCFVFFFMLLFFVFWVVLVFCF--FVGFFVVVLWYRLYLKL 200
Query: 278 GRSL*ILSI**CLIFCLFACVF 213
G FCL VF
Sbjct: 201 G-----------YFFCLILVVF 211
>pir||E22845 hypothetical protein 4 - Trypanosoma brucei mitochondrion
Length = 445
Score = 33.9 bits (76), Expect = 1.1
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 19/91 (20%)
Frame = -3
Query: 431 VNNSCTLFFLLIFNFNFSFYIFV-------------------FVVLKIFLF*ERRWFFII 309
VNN C LF + I N+ FY+++ F++ IF F +F+I
Sbjct: 267 VNNFCFLFLIFISTKNYIFYLYLNFHLIYSISLVLLIIIYYFFIIYNIFDFKYNENYFLI 326
Query: 308 ILMGFLHFNAGRSL*ILSI**CLIFCLFACV 216
+ F FN ++S+ L+ CLF C+
Sbjct: 327 NFIFFSFFNNF----LISL---LLACLFLCI 350
>ref|NP_701228.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496294|gb|AAN35952.1|AE014841_35 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1337
Score = 33.5 bits (75), Expect = 1.4
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = -3
Query: 473 FLKLIYNIDPKYSIVNNSCTLFFLLIFNFNFSFYIFVFVVLKIF 342
F K + N++ +I+NN L + +I NF S FVFV+L+ F
Sbjct: 891 FEKDLKNVNTCMNILNNLIILIYYMIINFGSSCNKFVFVLLRFF 934
>gb|AAA62273.1| ORF2
Length = 141
Score = 33.5 bits (75), Expect = 1.4
Identities = 30/101 (29%), Positives = 44/101 (42%), Gaps = 10/101 (9%)
Frame = -2
Query: 420 MYSLFSTYF*FQFLILHICICSI-----KDFSLLGEEMVFYYNFDGFLAF*CRQKSLDFI 256
+Y +F F F F L + +C I F LL ++FY+ FD + F C L FI
Sbjct: 17 VYGIFYCCFVFCFCCLFVWVCFICFVIVVCFFLLFWVVIFYWCFDCIVYFFCDVIIL-FI 75
Query: 255 HIIMFDILFVCLCFF-----SFGSFKCMGILRAIYVIPSFI 148
F + F+ CF+ F F C+ IY + F+
Sbjct: 76 FFFYFVLCFLYCCFYLVCLVFFCIFCCVLCYFLIYFLCCFL 116
>pir||T29720 hypothetical protein K11G9.5 - Caenorhabditis elegans
Length = 479
Score = 32.3 bits (72), Expect = 3.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 273 KSLDFIHIIMFDILFVCLCFFSFGSFKC 190
+SL ++ +++F ++F CLC G +KC
Sbjct: 341 QSLHYVSVVLFSVIFSCLCLNVAGFYKC 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,799,613
Number of Sequences: 1393205
Number of extensions: 7581190
Number of successful extensions: 16869
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 15899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16739
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
