Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001654A_C01 KMC001654A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190926.1| diaminopimelate epimerase - like protein; prote... 199 7e-58
sp|Q8YVD0|DAP2_ANASP Diaminopimelate epimerase 2 (DAP epimerase 2) 149 7e-41
ref|NP_486088.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]... 149 7e-41
ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PC... 145 9e-39
gb|ZP_00112068.1| hypothetical protein [Nostoc punctiforme] 138 2e-37
>ref|NP_190926.1| diaminopimelate epimerase - like protein; protein id: At3g53580.1
[Arabidopsis thaliana] gi|11272982|pir||T45898
diaminopimelate epimerase-like protein - Arabidopsis
thaliana gi|6729509|emb|CAB67665.1| diaminopimelate
epimerase-like protein [Arabidopsis thaliana]
gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280
[Arabidopsis thaliana] gi|23505901|gb|AAN28810.1|
At3g53580/F4P12_280 [Arabidopsis thaliana]
Length = 362
Score = 199 bits (505), Expect(2) = 7e-58
Identities = 95/115 (82%), Positives = 101/115 (87%)
Frame = -1
Query: 621 AVLISELDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVDELKLAEIGPKFEHHEMFPAR 442
AV+ +EL VDGV WNVTCVSMGNPHCITF +KG +L VD+L L EIGPKFEHHEMFPAR
Sbjct: 217 AVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPAR 276
Query: 441 TNTEFVQVLSNSHLKMRVWERGAGATLACGTGACALVVAAVLEGHTGRNCTVDLP 277
TNTEFV+VLS SHLKMRVWERGAGATLACGTGACALVVAAVLEG R CTVDLP
Sbjct: 277 TNTEFVEVLSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLP 331
Score = 47.4 bits (111), Expect(2) = 7e-58
Identities = 17/24 (70%), Positives = 22/24 (90%)
Frame = -2
Query: 278 PGGPLQIEWREEDNHVYMTGSARS 207
PGGPL+IEW++EDNH+YMTG A +
Sbjct: 331 PGGPLEIEWKQEDNHIYMTGPAEA 354
>sp|Q8YVD0|DAP2_ANASP Diaminopimelate epimerase 2 (DAP epimerase 2)
Length = 279
Score = 149 bits (376), Expect(2) = 7e-41
Identities = 74/117 (63%), Positives = 84/117 (71%)
Frame = -1
Query: 627 DGAVLISELDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVDELKLAEIGPKFEHHEMFP 448
DG V+ L+V+G W VTCVSMGNPHCITF V + L IGPKFEHH FP
Sbjct: 140 DGKVINQPLEVEGQTWEVTCVSMGNPHCITFVED------VAAIPLEIIGPKFEHHPAFP 193
Query: 447 ARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACALVVAAVLEGHTGRNCTVDLP 277
RTNTEF+QV+S +LKMRVWERGAG TLACGTGACA +VAAVL G + R TV+LP
Sbjct: 194 QRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAAVLTGRSDRLATVELP 250
Score = 40.0 bits (92), Expect(2) = 7e-41
Identities = 16/30 (53%), Positives = 21/30 (69%)
Frame = -2
Query: 302 EEIARLISPGGPLQIEWREEDNHVYMTGSA 213
+ +A + PGGPL+IEW E D +YMTG A
Sbjct: 242 DRLATVELPGGPLEIEWSEVDQRIYMTGPA 271
>ref|NP_486088.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
gi|25294029|pir||AB2062 diaminopimelate epimerase
[imported] - Nostoc sp. (strain PCC 7120)
gi|17131139|dbj|BAB73747.1| diaminopimelate epimerase
[Nostoc sp. PCC 7120]
Length = 246
Score = 149 bits (376), Expect(2) = 7e-41
Identities = 74/117 (63%), Positives = 84/117 (71%)
Frame = -1
Query: 627 DGAVLISELDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVDELKLAEIGPKFEHHEMFP 448
DG V+ L+V+G W VTCVSMGNPHCITF V + L IGPKFEHH FP
Sbjct: 107 DGKVINQPLEVEGQTWEVTCVSMGNPHCITFVED------VAAIPLEIIGPKFEHHPAFP 160
Query: 447 ARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACALVVAAVLEGHTGRNCTVDLP 277
RTNTEF+QV+S +LKMRVWERGAG TLACGTGACA +VAAVL G + R TV+LP
Sbjct: 161 QRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAAVLTGRSDRLATVELP 217
Score = 40.0 bits (92), Expect(2) = 7e-41
Identities = 16/30 (53%), Positives = 21/30 (69%)
Frame = -2
Query: 302 EEIARLISPGGPLQIEWREEDNHVYMTGSA 213
+ +A + PGGPL+IEW E D +YMTG A
Sbjct: 209 DRLATVELPGGPLEIEWSEVDQRIYMTGPA 238
>ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
gi|2494041|sp|P74667|DAPF_SYNY3 Diaminopimelate
epimerase (DAP epimerase) gi|7438178|pir||S76873
hypothetical protein - Synechocystis sp. (strain PCC
6803) gi|1653875|dbj|BAA18785.1| diaminopimelate
epimerase [Synechocystis sp. PCC 6803]
Length = 279
Score = 145 bits (367), Expect(2) = 9e-39
Identities = 73/109 (66%), Positives = 77/109 (69%)
Frame = -1
Query: 603 LDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVDELKLAEIGPKFEHHEMFPARTNTEFV 424
L V G W VTCVSMGNPHC+TF VD L L EIGP FEHH F RTNTEF+
Sbjct: 146 LAVAGQTWAVTCVSMGNPHCLTFVDD------VDSLNLTEIGPLFEHHPQFSQRTNTEFI 199
Query: 423 QVLSNSHLKMRVWERGAGATLACGTGACALVVAAVLEGHTGRNCTVDLP 277
QVL + LKMRVWERGAG TLACGTGACA VVAAVL G R CTV+LP
Sbjct: 200 QVLGSDRLKMRVWERGAGITLACGTGACATVVAAVLTGRGDRRCTVELP 248
Score = 36.6 bits (83), Expect(2) = 9e-39
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = -2
Query: 278 PGGPLQIEWREEDNHVYMTGSAR 210
PGG L+IEW +DN +YMTG A+
Sbjct: 248 PGGNLEIEWSAQDNRLYMTGPAQ 270
>gb|ZP_00112068.1| hypothetical protein [Nostoc punctiforme]
Length = 279
Score = 138 bits (347), Expect(2) = 2e-37
Identities = 68/114 (59%), Positives = 78/114 (67%)
Frame = -1
Query: 618 VLISELDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVDELKLAEIGPKFEHHEMFPART 439
V+ L+V G W VTCV+MGNPHCITF V ++L IGPKFEHH FP R
Sbjct: 143 VISVPLEVAGKTWEVTCVNMGNPHCITFVED------VAAIELESIGPKFEHHPAFPQRI 196
Query: 438 NTEFVQVLSNSHLKMRVWERGAGATLACGTGACALVVAAVLEGHTGRNCTVDLP 277
NTEF+QV+ +LKMRVWERGAG TLACGTGACA +VA VL G R TV+LP
Sbjct: 197 NTEFIQVVRRDYLKMRVWERGAGITLACGTGACASLVAGVLTGKCDRTATVELP 250
Score = 40.0 bits (92), Expect(2) = 2e-37
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 278 PGGPLQIEWREEDNHVYMTGSA 213
PGGPLQIEW E D VYMTG A
Sbjct: 250 PGGPLQIEWSEIDQRVYMTGPA 271
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,660,211
Number of Sequences: 1393205
Number of extensions: 11866141
Number of successful extensions: 33415
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 30924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33171
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
