Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001653A_C01 KMC001653A_c01
(452 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79611.1|AC027665_12 F5M15.17 [Arabidopsis thaliana] 121 3e-27
ref|NP_564115.1| expressed protein; protein id: At1g20510.1 [Ara... 121 3e-27
gb|AAM22700.1|AC098693_5 Putative AMP-binding protein [Oryza sat... 121 4e-27
ref|NP_173474.1| hypothetical protein; protein id: At1g20500.1 [... 117 4e-26
ref|NP_173473.1| hypothetical protein; protein id: At1g20490.1 [... 114 3e-25
>gb|AAF79611.1|AC027665_12 F5M15.17 [Arabidopsis thaliana]
Length = 580
Score = 121 bits (304), Expect = 3e-27
Identities = 58/71 (81%), Positives = 66/71 (92%)
Frame = -2
Query: 451 IPYPDKEAGQFPMAYVVRKDGGSISEKQVMDFVAEQVAPYKRIRKVAFISSIPKNASGKI 272
IP+PDKE GQFPMAYVVRK G S+SEK +M+FVA+QVAPYKRIRKVAF+SSIPKN SGKI
Sbjct: 506 IPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKI 565
Query: 271 LRKDLIQLATS 239
LRKDLI++ATS
Sbjct: 566 LRKDLIKIATS 576
>ref|NP_564115.1| expressed protein; protein id: At1g20510.1 [Arabidopsis thaliana]
gi|13430676|gb|AAK25960.1|AF360250_1 unknown protein
[Arabidopsis thaliana] gi|14532846|gb|AAK64105.1|
unknown protein [Arabidopsis thaliana]
Length = 546
Score = 121 bits (304), Expect = 3e-27
Identities = 58/71 (81%), Positives = 66/71 (92%)
Frame = -2
Query: 451 IPYPDKEAGQFPMAYVVRKDGGSISEKQVMDFVAEQVAPYKRIRKVAFISSIPKNASGKI 272
IP+PDKE GQFPMAYVVRK G S+SEK +M+FVA+QVAPYKRIRKVAF+SSIPKN SGKI
Sbjct: 472 IPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKI 531
Query: 271 LRKDLIQLATS 239
LRKDLI++ATS
Sbjct: 532 LRKDLIKIATS 542
>gb|AAM22700.1|AC098693_5 Putative AMP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 565
Score = 121 bits (303), Expect = 4e-27
Identities = 55/73 (75%), Positives = 69/73 (94%)
Frame = -2
Query: 451 IPYPDKEAGQFPMAYVVRKDGGSISEKQVMDFVAEQVAPYKRIRKVAFISSIPKNASGKI 272
IP+PD+E GQFPMAY+VRK G ++SE++VM+FVA+QVAPYK++RKVAF++ IPKNASGKI
Sbjct: 493 IPFPDREVGQFPMAYIVRKKGSNLSEREVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKI 552
Query: 271 LRKDLIQLATSKL 233
LRKDLI+LATSKL
Sbjct: 553 LRKDLIKLATSKL 565
>ref|NP_173474.1| hypothetical protein; protein id: At1g20500.1 [Arabidopsis
thaliana]
Length = 550
Score = 117 bits (294), Expect = 4e-26
Identities = 56/73 (76%), Positives = 68/73 (92%)
Frame = -2
Query: 451 IPYPDKEAGQFPMAYVVRKDGGSISEKQVMDFVAEQVAPYKRIRKVAFISSIPKNASGKI 272
IP+PDKEAGQ+PMAYVVRK ++SEKQV+DF+++QVAPYK+IRKV+FI+SIPK ASGK
Sbjct: 478 IPFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTASGKT 537
Query: 271 LRKDLIQLATSKL 233
LRKDLI+LATSKL
Sbjct: 538 LRKDLIKLATSKL 550
>ref|NP_173473.1| hypothetical protein; protein id: At1g20490.1 [Arabidopsis
thaliana]
Length = 530
Score = 114 bits (286), Expect = 3e-25
Identities = 54/73 (73%), Positives = 66/73 (89%)
Frame = -2
Query: 451 IPYPDKEAGQFPMAYVVRKDGGSISEKQVMDFVAEQVAPYKRIRKVAFISSIPKNASGKI 272
IP+PD+EAGQ+PMAYV RK ++SEK+V+DF++ QVAPYK+IRKVAFISSIPK ASGK
Sbjct: 458 IPFPDREAGQYPMAYVARKPESNLSEKEVIDFISNQVAPYKKIRKVAFISSIPKTASGKT 517
Query: 271 LRKDLIQLATSKL 233
LRKDLI+L+TSKL
Sbjct: 518 LRKDLIKLSTSKL 530
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,055,728
Number of Sequences: 1393205
Number of extensions: 7489338
Number of successful extensions: 16811
Number of sequences better than 10.0: 799
Number of HSP's better than 10.0 without gapping: 16387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16689
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
