Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001651A_C01 KMC001651A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK73147.1|AC079022_20 putative RING-H2 finger protein [Oryza... 49 2e-05
pir||A48018 mucin 7 precursor, salivary - human 37 0.090
ref|NP_689504.1| hypothetical protein MGC34772 [Homo sapiens] gi... 37 0.090
ref|NP_196627.1| vacuolar calcium binding protein - like; protei... 36 0.26
ref|NP_002238.2| large conductance calcium-activated potassium c... 35 0.58
>gb|AAK73147.1|AC079022_20 putative RING-H2 finger protein [Oryza sativa]
Length = 386
Score = 49.3 bits (116), Expect = 2e-05
Identities = 32/84 (38%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Frame = -2
Query: 491 VYTEVDGG--GGGGSSRISFSVGSSRVRESRGFRRVFRNFVSFFGNRSRSIS-------- 342
VYTE+DGG GG RIS+ SR E RR+FRN S FG S S
Sbjct: 290 VYTEMDGGFNNGGAPRRISWGSRQSRSTERSAIRRIFRNVFSCFGRSHSSNSQASSSHSR 349
Query: 341 ---------NSLFSRSTRRRSTTW 297
+++FS +R RST+W
Sbjct: 350 PELNDASDRSAVFSHGSRSRSTSW 373
>pir||A48018 mucin 7 precursor, salivary - human
Length = 377
Score = 37.4 bits (85), Expect = 0.090
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 282 STFMDPSGASSPSASTEQR-IRNATTPIPKERHEIAKNSAKPTTLPNSAASH*KRDSTRT 458
+T +DPS AS+P +T +ATTP P + +A P T PNS+ + D++ T
Sbjct: 266 ATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSET 325
Query: 459 TTA 467
+ A
Sbjct: 326 SAA 328
>ref|NP_689504.1| hypothetical protein MGC34772 [Homo sapiens]
gi|19343619|gb|AAH25688.1| Unknown (protein for
MGC:34772) [Homo sapiens]
Length = 377
Score = 37.4 bits (85), Expect = 0.090
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 282 STFMDPSGASSPSASTEQR-IRNATTPIPKERHEIAKNSAKPTTLPNSAASH*KRDSTRT 458
+T +DPS AS+P +T +ATTP P + +A P T PNS+ + D++ T
Sbjct: 266 ATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSET 325
Query: 459 TTA 467
+ A
Sbjct: 326 SAA 328
>ref|NP_196627.1| vacuolar calcium binding protein - like; protein id: At5g10660.1
[Arabidopsis thaliana] gi|10129644|emb|CAC08240.1|
vacuolar calcium binding protein-like [Arabidopsis
thaliana]
Length = 407
Score = 35.8 bits (81), Expect = 0.26
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Frame = +3
Query: 132 SSSQYFSNPKGREKLNLLVLTKYPILCYLQ*ELESQTEMDSFLSKNNSI---------KS 284
SSS+ +N G ++ + P+ YL+ + S+ + FL KNN++ +S
Sbjct: 31 SSSEPEANADGSDRKTI----GKPLPNYLKPTISSRPDPVKFLRKNNAVEENQKLLRRRS 86
Query: 285 TFMDPSGASSPSASTEQRIRNATTPIPKERHEIAKNSAKPTTLPNSAASH 434
PS +SPS S+ R N + P R + A KP T S + H
Sbjct: 87 FDHPPSSLTSPSTSSAHRSLNTSPAHPHLRDKPAVPREKPVTGLRSTSFH 136
>ref|NP_002238.2| large conductance calcium-activated potassium channel subfamily M
alpha member 1; Drosophila slowpoke-like;
calcium-activated potassium channel alpha subunit; BKCA
alpha subunit [Homo sapiens] gi|758791|gb|AAA92290.1|
calcium-activated potassium channel
gi|1583524|prf||2121221A Ca-activated K channel
Length = 1178
Score = 34.7 bits (78), Expect = 0.58
Identities = 26/69 (37%), Positives = 35/69 (50%)
Frame = -2
Query: 473 GGGGGGSSRISFSVGSSRVRESRGFRRVFRNFVSFFGNRSRSISNSLFSRSTRRRSTTWV 294
GGGGGGSS G S +R S + N +S + S S S+S S S+ S++ V
Sbjct: 5 GGGGGGSSGGGGGGGGSSLRMS---SNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSV 61
Query: 293 HEG*FD*VI 267
HE D +I
Sbjct: 62 HEPKMDALI 70
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,703,775
Number of Sequences: 1393205
Number of extensions: 9215884
Number of successful extensions: 61729
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 43956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58469
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
