Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001650A_C01 KMC001650A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK93670.1| putative nucleotide sugar epimerase [Arabidopsis ... 154 4e-37
ref|NP_192962.1| nucleotide sugar epimerase -like protein; prote... 154 4e-37
ref|NP_182056.1| putative nucleotide sugar epimerase; protein id... 150 8e-36
ref|NP_191922.1| putative nucleotide sugar epimerase; protein id... 144 8e-34
gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis... 139 3e-32
>gb|AAK93670.1| putative nucleotide sugar epimerase [Arabidopsis thaliana]
Length = 436
Score = 154 bits (390), Expect = 4e-37
Identities = 71/97 (73%), Positives = 86/97 (88%)
Frame = -2
Query: 514 KKKGPAQFRVFNLGNTSPVPVTELVKILEKLLKVKAKKKVLPMPRNGDVRFTHANISLAH 335
KKKGPA FR++NLGNTSPVPVT+LV ILEKLLK+KAKKK++P+PRNGDV FTHANI+LA
Sbjct: 342 KKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQ 401
Query: 334 RDLGYRPTTDLETGLRKFVKWYLEFYSGSGSIKKAAW 224
+LGY+P DLETGL+KFVKWY+ FY+GS KK++W
Sbjct: 402 AELGYKPAVDLETGLKKFVKWYMGFYTGSK--KKSSW 436
>ref|NP_192962.1| nucleotide sugar epimerase -like protein; protein id: At4g12250.1,
supported by cDNA: gi_15293118 [Arabidopsis thaliana]
gi|11358591|pir||T48135 nucleotide sugar epimerase-like
protein - Arabidopsis thaliana
gi|5281036|emb|CAB45972.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|7267926|emb|CAB78268.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|23297355|gb|AAN12948.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 436
Score = 154 bits (390), Expect = 4e-37
Identities = 71/97 (73%), Positives = 86/97 (88%)
Frame = -2
Query: 514 KKKGPAQFRVFNLGNTSPVPVTELVKILEKLLKVKAKKKVLPMPRNGDVRFTHANISLAH 335
KKKGPA FR++NLGNTSPVPVT+LV ILEKLLK+KAKKK++P+PRNGDV FTHANI+LA
Sbjct: 342 KKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQ 401
Query: 334 RDLGYRPTTDLETGLRKFVKWYLEFYSGSGSIKKAAW 224
+LGY+P DLETGL+KFVKWY+ FY+GS KK++W
Sbjct: 402 AELGYKPAVDLETGLKKFVKWYMGFYTGSK--KKSSW 436
>ref|NP_182056.1| putative nucleotide sugar epimerase; protein id: At2g45310.1
[Arabidopsis thaliana] gi|25408944|pir||A84889 probable
nucleotide sugar epimerase [imported] - Arabidopsis
thaliana gi|2583123|gb|AAB82632.1| putative nucleotide
sugar epimerase [Arabidopsis thaliana]
gi|28393645|gb|AAO42241.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
gi|28973495|gb|AAO64072.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 437
Score = 150 bits (379), Expect = 8e-36
Identities = 72/96 (75%), Positives = 85/96 (88%)
Frame = -2
Query: 514 KKKGPAQFRVFNLGNTSPVPVTELVKILEKLLKVKAKKKVLPMPRNGDVRFTHANISLAH 335
KK+GPAQ RVFNLGNTSPVPV++LV+ILE+ LKVKAKK ++ MPRNGDV FTHANISLA
Sbjct: 343 KKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQ 402
Query: 334 RDLGYRPTTDLETGLRKFVKWYLEFYSGSGSIKKAA 227
R+LGY+PTTDL+TGL+KFV+WYL +YSG KKAA
Sbjct: 403 RELGYKPTTDLQTGLKKFVRWYLSYYSGD---KKAA 435
>ref|NP_191922.1| putative nucleotide sugar epimerase; protein id: At4g00110.1
[Arabidopsis thaliana] gi|7486537|pir||T01339
hypothetical protein F6N15.16 - Arabidopsis thaliana
gi|3193316|gb|AAC19298.1| contains similarity to
nucleotide sugar epimerases [Arabidopsis thaliana]
gi|7267098|emb|CAB80769.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 430
Score = 144 bits (362), Expect = 8e-34
Identities = 68/96 (70%), Positives = 83/96 (85%)
Frame = -2
Query: 514 KKKGPAQFRVFNLGNTSPVPVTELVKILEKLLKVKAKKKVLPMPRNGDVRFTHANISLAH 335
KK+G AQ RVFNLGNTSPVPVT+LV ILE+LLKVKAK+ ++ +PRNGDV+FTHANIS A
Sbjct: 337 KKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQ 396
Query: 334 RDLGYRPTTDLETGLRKFVKWYLEFYSGSGSIKKAA 227
R+LGY+PTTDL+TGL+KF +WYL +Y+G KKAA
Sbjct: 397 RELGYKPTTDLQTGLKKFARWYLGYYNGG---KKAA 429
>gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis thaliana]
Length = 419
Score = 139 bits (349), Expect = 3e-32
Identities = 65/96 (67%), Positives = 79/96 (81%)
Frame = -2
Query: 514 KKKGPAQFRVFNLGNTSPVPVTELVKILEKLLKVKAKKKVLPMPRNGDVRFTHANISLAH 335
KK+G AQ RVFNLGNTSPVPVT+LV ILE+LLKVKAK+ ++ +PRNGDV FTHANIS A
Sbjct: 323 KKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQ 382
Query: 334 RDLGYRPTTDLETGLRKFVKWYLEFYSGSGSIKKAA 227
R+ GY+P+TDL+TGL+KFV+WYL +Y G AA
Sbjct: 383 REFGYKPSTDLQTGLKKFVRWYLGYYKQGGKKVAAA 418
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,615,552
Number of Sequences: 1393205
Number of extensions: 9681949
Number of successful extensions: 30810
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 29709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30702
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
