Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001649A_C01 KMC001649A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07989 acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor... 233 2e-60
ref|NP_180873.1| 3-ketoacyl-CoA thiolase; protein id: At2g33150.... 231 8e-60
pir||S72532 acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor... 222 3e-57
emb|CAA47926.1| 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransfer... 221 6e-57
pir||S33637 acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor... 219 2e-56
>pir||T07989 acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor, glyoxysomal -
rape gi|1066163|emb|CAA63598.1| glyoxysomal
beta-ketoacyl-thiolase [Brassica napus]
Length = 462
Score = 233 bits (593), Expect = 2e-60
Identities = 118/128 (92%), Positives = 122/128 (95%), Gaps = 2/128 (1%)
Frame = -1
Query: 627 VGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDLEKINVNGGAMAIGHP 448
VGPA AIP AVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLD EKINVNGGAMAIGHP
Sbjct: 335 VGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDAEKINVNGGAMAIGHP 394
Query: 447 LGATGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDGVDELRNARKVDNL 268
LGATGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGDGVDELRNARKV++
Sbjct: 395 LGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVES- 453
Query: 267 H--LSKDA 250
H LSKDA
Sbjct: 454 HGLLSKDA 461
>ref|NP_180873.1| 3-ketoacyl-CoA thiolase; protein id: At2g33150.1, supported by
cDNA: 36488., supported by cDNA: gi_11993852, supported
by cDNA: gi_13194829, supported by cDNA: gi_15450668,
supported by cDNA: gi_16648798, supported by cDNA:
gi_17380613, supported by cDNA: gi_2981615 [Arabidopsis
thaliana] gi|25453511|pir||T52110 acetyl-CoA
C-acyltransferase (EC 2.3.1.16) precursor, glyoxysomal -
Arabidopsis thaliana gi|2924779|gb|AAC04908.1|
3-ketoacyl-CoA thiolase [Arabidopsis thaliana]
gi|2981616|dbj|BAA25248.1| 3-ketoacyl-CoA thiolase
[Arabidopsis thaliana] gi|2981618|dbj|BAA25249.1|
3-ketoacyl-CoA thiolase [Arabidopsis thaliana]
gi|11993853|gb|AAG42910.1|AF327529_1 putative
3-ketoacyl-CoA thiolase [Arabidopsis thaliana]
gi|13194830|gb|AAK15577.1|AF349530_1 putative
3-ketoacyl-CoA thiolase [Arabidopsis thaliana]
gi|15450669|gb|AAK96606.1| At2g33150/F25I18.11
[Arabidopsis thaliana] gi|17380614|gb|AAL36070.1|
At2g33150/F25I18.11 [Arabidopsis thaliana]
gi|21593136|gb|AAM65085.1| 3-ketoacyl-CoA thiolase
[Arabidopsis thaliana]
Length = 462
Score = 231 bits (588), Expect = 8e-60
Identities = 116/127 (91%), Positives = 120/127 (94%), Gaps = 1/127 (0%)
Frame = -1
Query: 627 VGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDLEKINVNGGAMAIGHP 448
+GPA AIP AVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLD EKINVNGGAMAIGHP
Sbjct: 335 IGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHP 394
Query: 447 LGATGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDGVDELRNARKVDNL 268
LGATGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGDGVDELRNARKV+
Sbjct: 395 LGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQ 454
Query: 267 H-LSKDA 250
LSKDA
Sbjct: 455 GLLSKDA 461
>pir||S72532 acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit
gi|1694621|dbj|BAA11117.1| 3-ketoacyl-CoA thiolase
[Cucurbita cv. Kurokawa Amakuri]
Length = 461
Score = 222 bits (566), Expect = 3e-57
Identities = 112/127 (88%), Positives = 119/127 (93%), Gaps = 1/127 (0%)
Frame = -1
Query: 627 VGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDLEKINVNGGAMAIGHP 448
VGPA AIP AVKAAGLEL+DIDLFEINEAFASQFVYCRNKLGLD EKINVNGGA+AIGHP
Sbjct: 334 VGPAVAIPAAVKAAGLELNDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAIAIGHP 393
Query: 447 LGATGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDGVDELRNARKVDNL 268
LG TGARCVATLLHEMKRRG+DCRFGVISMCIGTGMGAAAVFERGD VDEL NA+KV+ +
Sbjct: 394 LGTTGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDCVDELCNAKKVEGI 453
Query: 267 H-LSKDA 250
+ LSKDA
Sbjct: 454 NLLSKDA 460
>emb|CAA47926.1| 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis
sativus]
Length = 462
Score = 221 bits (563), Expect = 6e-57
Identities = 115/129 (89%), Positives = 120/129 (92%), Gaps = 3/129 (2%)
Frame = -1
Query: 627 VGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDLEKINVNGGAMAIGHP 448
VGPA AIP AVKAAGLEL+DIDLFEINEAFASQFVYCRNKLGLD EKINVNGGA+AIGHP
Sbjct: 334 VGPAVAIPAAVKAAGLELNDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAIAIGHP 393
Query: 447 LGATGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDGVDELRNARKVD-- 274
LGATGARCVATLLHEMKRRG+DCRFGVISMCIGTGMGAAAVFERGD VDEL NA+KV+
Sbjct: 394 LGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDCVDELCNAKKVEGG 453
Query: 273 -NLHLSKDA 250
NL LSKDA
Sbjct: 454 VNL-LSKDA 461
>pir||S33637 acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucumber
Length = 459
Score = 219 bits (558), Expect = 2e-56
Identities = 114/129 (88%), Positives = 119/129 (91%), Gaps = 3/129 (2%)
Frame = -1
Query: 627 VGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDLEKINVNGGAMAIGHP 448
VGPA AIP AVKAAGLEL+DIDLFEINEAF SQFVYCRNKLGLD EKINVNGGA+AIGHP
Sbjct: 331 VGPAVAIPAAVKAAGLELNDIDLFEINEAFRSQFVYCRNKLGLDPEKINVNGGAIAIGHP 390
Query: 447 LGATGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDGVDELRNARKVD-- 274
LGATGARCVATLLHEMKRRG+DCRFGVISMCIGTGMGAAAVFERGD VDEL NA+KV+
Sbjct: 391 LGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDCVDELCNAKKVEGG 450
Query: 273 -NLHLSKDA 250
NL LSKDA
Sbjct: 451 VNL-LSKDA 458
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,359,634
Number of Sequences: 1393205
Number of extensions: 11410090
Number of successful extensions: 44000
Number of sequences better than 10.0: 662
Number of HSP's better than 10.0 without gapping: 39050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43068
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
