Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001648A_C03 KMC001648A_c03
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM48129.1|AF506366_1 glutamate decarboxylase [Nicotiana taba... 163 2e-39
gb|AAB40608.1| glutamate decarboxylase 163 2e-39
gb|AAC24195.1| glutamate decarboxylase isozyme 1 [Nicotiana taba... 163 2e-39
gb|AAK18620.1|AF352732_1 glutamate decarboxylase isozyme 3 [Nico... 161 8e-39
sp|Q07346|DCE_PETHY Glutamate decarboxylase (GAD) gi|1076648|pir... 159 3e-38
>gb|AAM48129.1|AF506366_1 glutamate decarboxylase [Nicotiana tabacum]
Length = 496
Score = 163 bits (413), Expect = 2e-39
Identities = 83/123 (67%), Positives = 99/123 (80%)
Frame = -3
Query: 663 VPLVAFTLKDHTHYNEFQISDSLRRFGWIVPAYSMPPNTQHVTVVRVVIREDFSRTLAER 484
VPLVAF+LKD++ +NEF+IS++LRRFGWIVPAY+MPPN QHVTV+RVVIREDFSRTLAER
Sbjct: 373 VPLVAFSLKDNSQHNEFEISETLRRFGWIVPAYTMPPNAQHVTVLRVVIREDFSRTLAER 432
Query: 483 LVADIEKVLHELDSLPARVISSTTVTVTGEEDVNKNGKVKKSAIETQREITTLWKNFVLE 304
LV DIEKVLHELD+LPARV + V + N +G KK+ E Q EITT WK FV +
Sbjct: 433 LVIDIEKVLHELDTLPARVNAKLAVA-----EANGSGVHKKTDREVQLEITTAWKKFVAD 487
Query: 303 RKK 295
+KK
Sbjct: 488 KKK 490
>gb|AAB40608.1| glutamate decarboxylase
Length = 496
Score = 163 bits (412), Expect = 2e-39
Identities = 82/123 (66%), Positives = 99/123 (79%)
Frame = -3
Query: 663 VPLVAFTLKDHTHYNEFQISDSLRRFGWIVPAYSMPPNTQHVTVVRVVIREDFSRTLAER 484
VPLVAF+LKD++ +NEF+IS++LRRFGWI+PAY+MPPN QHVTV+RVVIREDFSRTLAER
Sbjct: 373 VPLVAFSLKDNSQHNEFEISETLRRFGWIIPAYTMPPNAQHVTVLRVVIREDFSRTLAER 432
Query: 483 LVADIEKVLHELDSLPARVISSTTVTVTGEEDVNKNGKVKKSAIETQREITTLWKNFVLE 304
LV DIEKVLHELD+LPARV + V + N +G KK+ E Q EITT WK FV +
Sbjct: 433 LVIDIEKVLHELDTLPARVNAKLAVA-----EANGSGVHKKTDREVQLEITTAWKKFVAD 487
Query: 303 RKK 295
+KK
Sbjct: 488 KKK 490
>gb|AAC24195.1| glutamate decarboxylase isozyme 1 [Nicotiana tabacum]
Length = 496
Score = 163 bits (412), Expect = 2e-39
Identities = 82/123 (66%), Positives = 99/123 (79%)
Frame = -3
Query: 663 VPLVAFTLKDHTHYNEFQISDSLRRFGWIVPAYSMPPNTQHVTVVRVVIREDFSRTLAER 484
VPLVAF+LKD++ +NEF+IS++LRRFGWI+PAY+MPPN QHVTV+RVVIREDFSRTLAER
Sbjct: 373 VPLVAFSLKDNSQHNEFEISETLRRFGWIIPAYTMPPNAQHVTVLRVVIREDFSRTLAER 432
Query: 483 LVADIEKVLHELDSLPARVISSTTVTVTGEEDVNKNGKVKKSAIETQREITTLWKNFVLE 304
LV DIEKVLHELD+LPARV + V + N +G KK+ E Q EITT WK FV +
Sbjct: 433 LVIDIEKVLHELDTLPARVNAKLAVA-----EANGSGVHKKTDREVQLEITTAWKKFVAD 487
Query: 303 RKK 295
+KK
Sbjct: 488 KKK 490
>gb|AAK18620.1|AF352732_1 glutamate decarboxylase isozyme 3 [Nicotiana tabacum]
Length = 496
Score = 161 bits (407), Expect = 8e-39
Identities = 81/123 (65%), Positives = 98/123 (78%)
Frame = -3
Query: 663 VPLVAFTLKDHTHYNEFQISDSLRRFGWIVPAYSMPPNTQHVTVVRVVIREDFSRTLAER 484
VPLVAF+LKD++ +NEF+IS++LRRFGWI+PAY+MPPN QHVTV+RVVIREDFSRTLAER
Sbjct: 373 VPLVAFSLKDNSQHNEFEISETLRRFGWIIPAYTMPPNAQHVTVLRVVIREDFSRTLAER 432
Query: 483 LVADIEKVLHELDSLPARVISSTTVTVTGEEDVNKNGKVKKSAIETQREITTLWKNFVLE 304
LV DIEKVLHELD+LPARV + V + N +G KK+ E Q EIT WK FV +
Sbjct: 433 LVIDIEKVLHELDTLPARVNAKLAVA-----EANGSGVHKKTDREVQLEITAAWKKFVAD 487
Query: 303 RKK 295
+KK
Sbjct: 488 KKK 490
>sp|Q07346|DCE_PETHY Glutamate decarboxylase (GAD) gi|1076648|pir||A48767 glutamate
decarboxylase (EC 4.1.1.15), calmodulin-binding - garden
petunia gi|294112|gb|AAA33709.1| glutamate decarboxylase
gi|309680|gb|AAA33710.1| glutamate decarboxylase
Length = 500
Score = 159 bits (402), Expect = 3e-38
Identities = 83/130 (63%), Positives = 100/130 (76%), Gaps = 2/130 (1%)
Frame = -3
Query: 663 VPLVAFTLKDHTHYNEFQISDSLRRFGWIVPAYSMPPNTQHVTVVRVVIREDFSRTLAER 484
VPLVAF+LKD+ +NEF+IS++LRRFGWIVPAY+MPPN QH+TV+RVVIREDFSRTLAER
Sbjct: 373 VPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAER 432
Query: 483 LVADIEKVLHELDSLPARVISSTTVTVTGEEDVNKNGKV--KKSAIETQREITTLWKNFV 310
LV DIEKVLHELD+LPARV + V EE NG KK+ E Q E+ T WK FV
Sbjct: 433 LVRDIEKVLHELDTLPARVNAKLAV---AEEQAAANGSEVHKKTDSEVQLEMITAWKKFV 489
Query: 309 LERKKLNDQM 280
E+KK +++
Sbjct: 490 EEKKKKTNRV 499
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,819,453
Number of Sequences: 1393205
Number of extensions: 11922585
Number of successful extensions: 33046
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 31947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32998
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
