Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001642A_C01 KMC001642A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA18589.1| hypothetical protein [Plasmodium yoelii yoelii] 33 3.4
gb|AAN63228.1| maturase K [Mantisia wengeri] 33 4.4
>gb|EAA18589.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2340
Score = 33.1 bits (74), Expect = 3.4
Identities = 18/53 (33%), Positives = 25/53 (46%)
Frame = +3
Query: 252 FIFYSKRGQLTSSIFHVDNKLRDASSTNIILII*YDNYVRIINHLVQNFFNFN 410
F +L + F + N TNI+ I YDN+V +I H + FNFN
Sbjct: 1321 FYLIYPNNELIINFFQIQN------ITNIVQICLYDNFVSLITHKKLHIFNFN 1367
>gb|AAN63228.1| maturase K [Mantisia wengeri]
Length = 516
Score = 32.7 bits (73), Expect = 4.4
Identities = 26/79 (32%), Positives = 37/79 (45%), Gaps = 8/79 (10%)
Frame = +3
Query: 249 IFIFYSKRGQLTSSIFH-------VDNKLRDASSTNIILII*YDNY-VRIINHLVQNFFN 404
I+IF G L SSIF+ DNK R +I+ + NY + +N + QN F
Sbjct: 28 IYIFGYDHG-LNSSIFYEPQNSLGYDNKFRSVLVKRLIIRMYQKNYLIYSVNDIYQNIFV 86
Query: 405 FNAGNFNLQILLSRILSQG 461
+ F S+ILS+G
Sbjct: 87 GHNNYFYFNFFFSQILSEG 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,409,477
Number of Sequences: 1393205
Number of extensions: 10624581
Number of successful extensions: 24544
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24528
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
