Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001641A_C01 KMC001641A_c01
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FUM1|EF1G_PRUAV Elongation factor 1-gamma (EF-1-gamma) (eEF... 254 1e-66
gb|AAO72574.1| elongation factor 1 gamma-like protein [Oryza sat... 253 2e-66
sp|Q9ZRI7|EF1G_ORYSA Elongation factor 1-gamma (EF-1-gamma) (eEF... 251 5e-66
gb|AAO72563.1| elongation factor 1 gamma-like protein [Oryza sat... 251 7e-66
gb|AAL87298.1| unknown protein [Arabidopsis thaliana] 246 2e-64
>sp|Q9FUM1|EF1G_PRUAV Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)
gi|10444415|gb|AAG17901.1|AF297712_1 translation
elongation factor 1-gamma [Prunus avium]
Length = 422
Score = 254 bits (648), Expect = 1e-66
Identities = 115/128 (89%), Positives = 123/128 (95%)
Frame = -3
Query: 693 IKGFWDMYDPEGYSLWFCDYKYNSENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSE 514
IKGFWDMYDPEGYSLWFC+YKYN ENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSE
Sbjct: 295 IKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSE 354
Query: 513 PPFKVKGLWLFRGQEVPQFVIDECYDMELYEWTKVDINDEAQKERVNQMIEDYEPFEGES 334
PPFKVKGLWLFRGQE+P FV++ECYDMELY WTKVD++DE QKERVNQ+IED EPFEGE+
Sbjct: 355 PPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEA 414
Query: 333 LLDAKCFK 310
LLDAKCFK
Sbjct: 415 LLDAKCFK 422
>gb|AAO72574.1| elongation factor 1 gamma-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 409
Score = 253 bits (645), Expect = 2e-66
Identities = 116/128 (90%), Positives = 122/128 (94%)
Frame = -3
Query: 693 IKGFWDMYDPEGYSLWFCDYKYNSENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSE 514
IKGFWDMYDPEGYSLWFCDYKYN ENTVSFVT+NKVGGFLQRMDL RKYAFGKMLVIGSE
Sbjct: 282 IKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSE 341
Query: 513 PPFKVKGLWLFRGQEVPQFVIDECYDMELYEWTKVDINDEAQKERVNQMIEDYEPFEGES 334
PPFKVKGLWLFRG E+P+FV+DE YDMELYEWTKVDI+DEAQKERV+ MIED EPFEGES
Sbjct: 342 PPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGES 401
Query: 333 LLDAKCFK 310
LLDAKCFK
Sbjct: 402 LLDAKCFK 409
>sp|Q9ZRI7|EF1G_ORYSA Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)
gi|3868758|dbj|BAA34206.1| elongation factor 1B gamma
[Oryza sativa]
Length = 418
Score = 251 bits (642), Expect = 5e-66
Identities = 115/128 (89%), Positives = 122/128 (94%)
Frame = -3
Query: 693 IKGFWDMYDPEGYSLWFCDYKYNSENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSE 514
IKGFWDMYDPEGYSLWFCDYKYN ENTVSFVT+NKVGGFLQRMDL RKYAFGKMLVIGSE
Sbjct: 291 IKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSE 350
Query: 513 PPFKVKGLWLFRGQEVPQFVIDECYDMELYEWTKVDINDEAQKERVNQMIEDYEPFEGES 334
PPFKVKGLWLFRG E+P+FV+DE YDMELYEWTKVDI+DEAQKERV+ MIED EPFEGE+
Sbjct: 351 PPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEA 410
Query: 333 LLDAKCFK 310
LLDAKCFK
Sbjct: 411 LLDAKCFK 418
>gb|AAO72563.1| elongation factor 1 gamma-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 413
Score = 251 bits (641), Expect = 7e-66
Identities = 114/128 (89%), Positives = 121/128 (94%)
Frame = -3
Query: 693 IKGFWDMYDPEGYSLWFCDYKYNSENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSE 514
IKGFWDMYDPEGYSLWFCDYKYN ENTVSFVT+NKVGGFLQRMDL RKYAFGKMLVIGS
Sbjct: 286 IKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGST 345
Query: 513 PPFKVKGLWLFRGQEVPQFVIDECYDMELYEWTKVDINDEAQKERVNQMIEDYEPFEGES 334
PPFKVKGLWLFRGQ++P+FV+DE YDMELYEWTKVD++DEAQKERVN MIED EPFEGE
Sbjct: 346 PPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGED 405
Query: 333 LLDAKCFK 310
LLDAKCFK
Sbjct: 406 LLDAKCFK 413
>gb|AAL87298.1| unknown protein [Arabidopsis thaliana]
Length = 345
Score = 246 bits (628), Expect = 2e-64
Identities = 112/128 (87%), Positives = 121/128 (94%)
Frame = -3
Query: 693 IKGFWDMYDPEGYSLWFCDYKYNSENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSE 514
IKGFWDMYDPEGYSLWFCDYKYN EN VSFVTLNKVGGFLQRMDLARKY+FGKML+ GSE
Sbjct: 218 IKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSE 277
Query: 513 PPFKVKGLWLFRGQEVPQFVIDECYDMELYEWTKVDINDEAQKERVNQMIEDYEPFEGES 334
PFKVKGLWLFRG E+P+F++DE YDMELYEWTKVDI+DEAQKERV+QMIED EPFEGE+
Sbjct: 278 GPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEA 337
Query: 333 LLDAKCFK 310
LLDAKCFK
Sbjct: 338 LLDAKCFK 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,615,880
Number of Sequences: 1393205
Number of extensions: 13575378
Number of successful extensions: 37875
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 36449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37773
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
