Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001640A_C01 KMC001640A_c01
(404 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178105.1| putative D-isomer specific 2-hydroxyacid dehydr... 150 5e-36
dbj|BAB78682.1| putative Caulobacter crescentus D-isomer specifi... 128 2e-29
ref|NP_355974.1| AGR_L_379p [Agrobacterium tumefaciens] gi|17938... 87 5e-17
ref|NP_435514.1| putative D-isomer specific 2-hydroxyacid [Sinor... 87 6e-17
gb|ZP_00052057.1| hypothetical protein [Magnetospirillum magneto... 79 1e-14
>ref|NP_178105.1| putative D-isomer specific 2-hydroxyacid dehydrogenase; protein id:
At1g79870.1, supported by cDNA: 42333., supported by
cDNA: gi_17978982 [Arabidopsis thaliana]
gi|25283867|pir||G96829 hypothetical protein F19K16.17
[imported] - Arabidopsis thaliana
gi|12324598|gb|AAG52259.1|AC011717_27 putative D-isomer
specific 2-hydroxyacid dehydrogenase; 59386-58329
[Arabidopsis thaliana] gi|17978983|gb|AAL47452.1|
At1g79870/F19K16_17 [Arabidopsis thaliana]
gi|21360429|gb|AAM47330.1| At1g79870/F19K16_17
[Arabidopsis thaliana] gi|21593743|gb|AAM65710.1|
putative D-isomer specific 2-hydroxyacid dehydrogenase
[Arabidopsis thaliana]
Length = 313
Score = 150 bits (378), Expect = 5e-36
Identities = 76/104 (73%), Positives = 85/104 (81%)
Frame = +3
Query: 93 MGSIGVLLVCQVMPYLEQELDKRFKLFREWDYPQKAQLLTNHAASIRAVVGNASAGADAE 272
M SIGVL++C + YLE EL+KRF L R W P+K+ LL H SIRAVVGNASAGADA+
Sbjct: 1 MESIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNSIRAVVGNASAGADAQ 60
Query: 273 LIDALPKLEIVSSFSVGVDKIDLNKCKEKGIRVTNTPDVLTDDV 404
LI LP LEIVSSFSVG+DKIDL KCKEKGIRVTNTPDVLT+DV
Sbjct: 61 LISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDV 104
>dbj|BAB78682.1| putative Caulobacter crescentus D-isomer specific 2-hydroxyacid
dehydrogenases family protein [Oryza sativa (japonica
cultivar-group)]
Length = 316
Score = 128 bits (321), Expect = 2e-29
Identities = 66/106 (62%), Positives = 81/106 (76%), Gaps = 2/106 (1%)
Frame = +3
Query: 93 MGSIGVLLVCQVMPYLEQELDKRFKLFREWDYP--QKAQLLTNHAASIRAVVGNASAGAD 266
M S+GVLLV + YLEQELD+R +LFR W+ P ++ L HA+SIRAVV A G D
Sbjct: 1 MDSLGVLLVAPMNAYLEQELDRRCRLFRLWESPADRRDDYLRAHASSIRAVVPYALQGVD 60
Query: 267 AELIDALPKLEIVSSFSVGVDKIDLNKCKEKGIRVTNTPDVLTDDV 404
A +IDALP LEIVSSFSVG+D++DL+ C +G+RVTNTPDVLTDDV
Sbjct: 61 AAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPDVLTDDV 106
>ref|NP_355974.1| AGR_L_379p [Agrobacterium tumefaciens] gi|17938380|ref|NP_535169.1|
2-hydroxyacid dehydrogenase [Agrobacterium tumefaciens
str. C58 (U. Washington)] gi|25283900|pir||E98154
hypothetical protein AGR_L_379 [imported] -
Agrobacterium tumefaciens (strain C58, Cereon)
gi|25283911|pir||AG3133 2-hydroxyacid dehydrogenase
Atu4691 [imported] - Agrobacterium tumefaciens (strain
C58, Dupont) gi|15158503|gb|AAK88759.1| AGR_L_379p
[Agrobacterium tumefaciens str. C58 (Cereon)]
gi|17743192|gb|AAL45485.1| 2-hydroxyacid dehydrogenase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 311
Score = 87.0 bits (214), Expect = 5e-17
Identities = 45/99 (45%), Positives = 64/99 (64%)
Frame = +3
Query: 108 VLLVCQVMPYLEQELDKRFKLFREWDYPQKAQLLTNHAASIRAVVGNASAGADAELIDAL 287
++ +C ++P LE+EL +RF + R ++ KA L+ A+IR VV G A++ AL
Sbjct: 5 IVQLCPLIPALEEELAQRFTVHRLFEAADKAAFLSEKGAAIRGVVTGGHIGLPADVGAAL 64
Query: 288 PKLEIVSSFSVGVDKIDLNKCKEKGIRVTNTPDVLTDDV 404
P LEIV+ VG DK+DL + K +G RV+NTPDVLT DV
Sbjct: 65 PNLEIVAINGVGFDKVDLGEAKRRGFRVSNTPDVLTADV 103
>ref|NP_435514.1| putative D-isomer specific 2-hydroxyacid [Sinorhizobium meliloti]
gi|25283880|pir||D95295 probable D-isomer specific
2-hydroxyacid [imported] - Sinorhizobium meliloti
(strain 1021) magaplasmid pSymA
gi|14523348|gb|AAK64926.1| putative D-isomer specific
2-hydroxyacid [Sinorhizobium meliloti]
Length = 315
Score = 86.7 bits (213), Expect = 6e-17
Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Frame = +3
Query: 123 QVMPYL---EQELDKRFKLFREWDYPQKAQLLTNHAASIRAVVGNASAGADAELIDALPK 293
QV PY E+ L+ F + R ++ KA L H A+IR + GA+ +I+ALP+
Sbjct: 8 QVGPYPSWDEERLNANFTMHRYFEAADKAAFLAEHGAAIRGIATRGELGANWAMIEALPR 67
Query: 294 LEIVSSFSVGVDKIDLNKCKEKGIRVTNTPDVLTDDV 404
LEI+S + VG D +DL +E+GIRVTNTPDVLT DV
Sbjct: 68 LEIISVYGVGYDAVDLAAARERGIRVTNTPDVLTKDV 104
>gb|ZP_00052057.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 355
Score = 79.0 bits (193), Expect = 1e-14
Identities = 43/99 (43%), Positives = 58/99 (58%)
Frame = +3
Query: 108 VLLVCQVMPYLEQELDKRFKLFREWDYPQKAQLLTNHAASIRAVVGNASAGADAELIDAL 287
+LL+ Q P + L +RF+L R + P + L IR + A DA L D L
Sbjct: 41 ILLIRQTRPDVAGRLSERFRLHRLEEAPDRDAFLGAAGPRIRGLAVGAMCPIDARLFDRL 100
Query: 288 PKLEIVSSFSVGVDKIDLNKCKEKGIRVTNTPDVLTDDV 404
P+LEIV+SF VG D ID+ + +GI VTNTPDVL+D+V
Sbjct: 101 PRLEIVASFGVGYDSIDVAEAHRRGIVVTNTPDVLSDEV 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,176,063
Number of Sequences: 1393205
Number of extensions: 9304852
Number of successful extensions: 165044
Number of sequences better than 10.0: 3772
Number of HSP's better than 10.0 without gapping: 76720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137857
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
