Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001639A_C01 KMC001639A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565878.1| expressed protein; protein id: At2g37990.1, sup... 50 8e-06
gb|AAM65576.1| unknown [Arabidopsis thaliana] 50 8e-06
sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homo... 50 8e-06
ref|NP_703476.1| hypothetical protein [Plasmodium falciparum 3D7... 45 3e-04
ref|NP_701789.1| hypothetical protein [Plasmodium falciparum 3D7... 41 0.005
>ref|NP_565878.1| expressed protein; protein id: At2g37990.1, supported by cDNA:
40538. [Arabidopsis thaliana]
Length = 318
Score = 50.4 bits (119), Expect = 8e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -1
Query: 445 ILIKIMSKNSHDILNVNKAVTVQTVKKEKKRNNDKARASSTDSKLKPKKKPFKK 284
+L KI SK+SH+ILNV KA+ + VKKEKK+ S KLKPKK KK
Sbjct: 266 VLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------SGRSDKLKPKKDITKK 312
>gb|AAM65576.1| unknown [Arabidopsis thaliana]
Length = 318
Score = 50.4 bits (119), Expect = 8e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -1
Query: 445 ILIKIMSKNSHDILNVNKAVTVQTVKKEKKRNNDKARASSTDSKLKPKKKPFKK 284
+L KI SK+SH+ILNV KA+ + VKKEKK+ S KLKPKK KK
Sbjct: 266 VLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------SGRSDKLKPKKDITKK 312
>sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homolog
gi|25408583|pir||F84799 hypothetical protein At2g37990
[imported] - Arabidopsis thaliana
Length = 352
Score = 50.4 bits (119), Expect = 8e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -1
Query: 445 ILIKIMSKNSHDILNVNKAVTVQTVKKEKKRNNDKARASSTDSKLKPKKKPFKK 284
+L KI SK+SH+ILNV KA+ + VKKEKK+ S KLKPKK KK
Sbjct: 300 VLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------SGRSDKLKPKKDITKK 346
>ref|NP_703476.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504617|emb|CAD51496.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2763
Score = 45.1 bits (105), Expect = 3e-04
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Frame = -1
Query: 448 KILIKIMSKNSHDILNVNKAVTVQTVKKEKKRNNDKARASSTDSKLKPK----KKPFKKG 281
K + I K+ H I N ++ K++K+NN+ + D+K + K KK KK
Sbjct: 647 KYCVDITEKSDHIIPRNNDTTQMENNNKKEKKNNNNKKGEKNDNKREKKNNNNKKEKKKN 706
Query: 280 DFKKSSGKGDFKKSSGKGDFKKSSAKPKQ*FRFYHRV*SFLNSVLLFL-------KFCRQ 122
+ KK K + KK + KK + K ++Y R +FL +L +L ++ ++
Sbjct: 707 NNKKEKKKNNNKKEKKNNNNKKENICTK--LKYYKRNNNFLFDLLNYLNKNINVNEYTKE 764
Query: 121 LFNLSFGVL 95
L N + +L
Sbjct: 765 LNNKKYDLL 773
>ref|NP_701789.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496962|gb|AAN36513.1|AE014851_32 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 231
Score = 41.2 bits (95), Expect = 0.005
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Frame = -1
Query: 457 KLKKILIKIMSKNSHDILNVNKAVTVQTVKKEKK-RNNDKARASSTDS---------KLK 308
KLKK K KNS D +++ + KK+KK +N +K + S D+ K K
Sbjct: 84 KLKKEYKKKKKKNSDDSNTTDESSQDEDSKKKKKNKNKNKNKKYSDDTSSDETSDYDKSK 143
Query: 307 PKKKPFKKGDFKKSSGKGDFKKSSGKGDFKKSSAKPKQ 194
+KK KK +K SS + SS KK++ K K+
Sbjct: 144 KRKKKKKKRKYKHSSSSDESMSSSDNSSSKKNNKKKKR 181
Score = 32.7 bits (73), Expect = 1.8
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = -1
Query: 439 IKIMSKNSHDILNVNKAVTVQTVKKE----KKRNNDKARASSTDSKLKPKKKPFKKGDFK 272
++ ++KN + + + ++ +KKE KK+N+D + + S+ + KK K +
Sbjct: 63 VEELNKNREEKIKEQEKRYIKKLKKEYKKKKKKNSDDSNTTDESSQDEDSKKKKKNKNKN 122
Query: 271 KSSGKGDFKKSSGKGDFKKSSAKPKQ 194
K+ D S D+ KS + K+
Sbjct: 123 KNKKYSDDTSSDETSDYDKSKKRKKK 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 338,148,624
Number of Sequences: 1393205
Number of extensions: 6483402
Number of successful extensions: 30645
Number of sequences better than 10.0: 271
Number of HSP's better than 10.0 without gapping: 26048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29813
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
