Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001638A_C02 KMC001638A_c02
(1218 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate delta-isomerase II ... 364 e-118
gb|AAF29973.1|AF188060_1 isopentenyl pyrophosphate:dimethyllally... 362 e-117
gb|AAF29974.1|AF188061_1 isopentenyl pyrophosphate:dimethyllally... 357 e-117
dbj|BAB40974.1| isopentenyl diphosphate isomerase 2 [Nicotiana t... 357 e-117
ref|NP_186927.1| isopentenyl diphosphate:dimethylallyl diphospha... 353 e-115
>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate delta-isomerase II (IPP isomerase II)
(Isopentenyl pyrophosphate isomerase II)
gi|2736288|gb|AAB94133.1| isopentenyl diphosphate
isomerase II [Camptotheca acuminata]
Length = 309
Score = 364 bits (935), Expect(2) = e-118
Identities = 182/236 (77%), Positives = 207/236 (87%), Gaps = 5/236 (2%)
Frame = -1
Query: 1176 SILSSSSSFRSRSLP-SLFFSP----VKNHNHNPLVASLSSHTAMGQTPTAADAGMDAVQ 1012
S SSSFR+ + S+F S V+ +++ VA+ ++ +AMG T T DAGMDAVQ
Sbjct: 31 SFFFHSSSFRNHIITRSVFCSSSHLSVRVSSYHSSVAAKATTSAMGDTAT--DAGMDAVQ 88
Query: 1011 RRLMFDDECILVDENDRVVGHDSKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRS 832
RRLMF+DECILVDEND VVGHD+KYNCHLMEKIES+NLLHRAFSVFLFNSKYELLLQQRS
Sbjct: 89 RRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRS 148
Query: 831 ATKVTFPLVWTNTCCSHPLHRESELIEENSLGVRNAAQRKLFDELGIPAEDVPVDQFTPL 652
ATKVTFPLVWTNTCCSHP +RESEL++EN+LGVRNAAQRKL DELGIPAEDVPVDQF PL
Sbjct: 149 ATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPL 208
Query: 651 GRILYKAPSDGKWGEHELDYLLFIVRDVNVHPNPDEVADIKYVNREELKELLRKAD 484
GR+LYKAPSDGKWGEHELDYLLFI+RDVNVHPNPDEVAD+KYVN+++LK+LLRK D
Sbjct: 209 GRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVD 264
Score = 86.3 bits (212), Expect(2) = e-118
Identities = 38/48 (79%), Positives = 43/48 (89%)
Frame = -2
Query: 491 KLMAGEGGLKLSPWFRLVVDHFLFKWWDHVERGTLGEVIDMKTIHKLT 348
K+ AGE GLKLSPWFRLVV++FLFKWWDHVE+GTL + DMKTIHKLT
Sbjct: 262 KVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309
>gb|AAF29973.1|AF188060_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase
[Adonis palaestina]
Length = 295
Score = 362 bits (928), Expect(2) = e-117
Identities = 185/243 (76%), Positives = 199/243 (81%), Gaps = 5/243 (2%)
Frame = -1
Query: 1197 SVFKRSNSILSSSSS-----FRSRSLPSLFFSPVKNHNHNPLVASLSSHTAMGQTPTAAD 1033
S+F + LS+S S + R S + N L +S + MG+ AD
Sbjct: 11 SIFSTTTKTLSASCSSPAVHLQQRCRTLSISSSITNSPRRGLNRLFASTSTMGEV---AD 67
Query: 1032 AGMDAVQRRLMFDDECILVDENDRVVGHDSKYNCHLMEKIESENLLHRAFSVFLFNSKYE 853
AGMDAVQ+RLMFDDECILVDEND+VVGHDSKYNCHLMEKIE+ENLLHRAFSVFLFNSKYE
Sbjct: 68 AGMDAVQKRLMFDDECILVDENDKVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYE 127
Query: 852 LLLQQRSATKVTFPLVWTNTCCSHPLHRESELIEENSLGVRNAAQRKLFDELGIPAEDVP 673
LLLQQRSATKVTFPLVWTNTCCSHPL R+SELIEEN LGVRNAAQRKL DELGIPAEDVP
Sbjct: 128 LLLQQRSATKVTFPLVWTNTCCSHPLFRDSELIEENFLGVRNAAQRKLLDELGIPAEDVP 187
Query: 672 VDQFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVHPNPDEVADIKYVNREELKELLR 493
VD+FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV PNPDEVAD KYVNREELKE+LR
Sbjct: 188 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVKYDPNPDEVADAKYVNREELKEILR 247
Query: 492 KAD 484
KAD
Sbjct: 248 KAD 250
Score = 84.0 bits (206), Expect(2) = e-117
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -2
Query: 491 KLMAGEGGLKLSPWFRLVVDHFLFKWWDHVERGTLGEVIDMKTIHKLT 348
K AGE G+KLSPWFRLVVD+FLFKWWDHVE G + +V DMKTIHKLT
Sbjct: 248 KADAGEEGIKLSPWFRLVVDNFLFKWWDHVEEGKIKDVADMKTIHKLT 295
>gb|AAF29974.1|AF188061_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase
[Adonis palaestina]
Length = 267
Score = 357 bits (916), Expect(2) = e-117
Identities = 176/212 (83%), Positives = 188/212 (88%)
Frame = -1
Query: 1119 SPVKNHNHNPLVASLSSHTAMGQTPTAADAGMDAVQRRLMFDDECILVDENDRVVGHDSK 940
S + N + L +S + MG+ DAGMDAVQ+RLMFDDECILVDEND+VVGHDSK
Sbjct: 14 SSITNSSRRRLNRLFASTSTMGEV---TDAGMDAVQKRLMFDDECILVDENDKVVGHDSK 70
Query: 939 YNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLHRESE 760
YNCHLMEKIE+ENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPL R+SE
Sbjct: 71 YNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLFRDSE 130
Query: 759 LIEENSLGVRNAAQRKLFDELGIPAEDVPVDQFTPLGRILYKAPSDGKWGEHELDYLLFI 580
LIEEN LGVRNAAQRKL DELGIPAEDVPVD+FTPLGRILYKAPSDGKWGEHELDYLLFI
Sbjct: 131 LIEENYLGVRNAAQRKLLDELGIPAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI 190
Query: 579 VRDVNVHPNPDEVADIKYVNREELKELLRKAD 484
VRDV PNPDEVAD KYVNREEL+E+LRKAD
Sbjct: 191 VRDVKYDPNPDEVADAKYVNREELREILRKAD 222
Score = 88.6 bits (218), Expect(2) = e-117
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = -2
Query: 491 KLMAGEGGLKLSPWFRLVVDHFLFKWWDHVERGTLGEVIDMKTIHKLT 348
K AGE GLKLSPWFRLVVD+FLFKWWDHVE+GT+ EV DMKTIHKLT
Sbjct: 220 KADAGEEGLKLSPWFRLVVDNFLFKWWDHVEQGTIKEVADMKTIHKLT 267
>dbj|BAB40974.1| isopentenyl diphosphate isomerase 2 [Nicotiana tabacum]
Length = 235
Score = 357 bits (916), Expect(2) = e-117
Identities = 172/185 (92%), Positives = 182/185 (97%)
Frame = -1
Query: 1038 ADAGMDAVQRRLMFDDECILVDENDRVVGHDSKYNCHLMEKIESENLLHRAFSVFLFNSK 859
ADA MDAVQRRLMF+DECILVDEND+VVGHD+KYNCHLME+IES NLLHRAFSVFLFNSK
Sbjct: 6 ADANMDAVQRRLMFEDECILVDENDQVVGHDTKYNCHLMERIESLNLLHRAFSVFLFNSK 65
Query: 858 YELLLQQRSATKVTFPLVWTNTCCSHPLHRESELIEENSLGVRNAAQRKLFDELGIPAED 679
YELLLQQRSATKVTFPLVWTNTCCSHPL+RESELIEEN+LGVRNAAQRKL DELGIPAED
Sbjct: 66 YELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIPAED 125
Query: 678 VPVDQFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVHPNPDEVADIKYVNREELKEL 499
VPVDQFTPLGR+LYKAPSDGKWGEHELDYLLFIVRDVNV+PNPDEVADIKYVN+E+LKEL
Sbjct: 126 VPVDQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVNQEQLKEL 185
Query: 498 LRKAD 484
LRKAD
Sbjct: 186 LRKAD 190
Score = 87.8 bits (216), Expect(2) = e-117
Identities = 39/48 (81%), Positives = 42/48 (87%)
Frame = -2
Query: 491 KLMAGEGGLKLSPWFRLVVDHFLFKWWDHVERGTLGEVIDMKTIHKLT 348
K AGE GLKLSPWFRLVVD+FLFKWWDHVE+GT+ E DMKTIHKLT
Sbjct: 188 KADAGEDGLKLSPWFRLVVDNFLFKWWDHVEKGTIQEAADMKTIHKLT 235
>ref|NP_186927.1| isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP2);
protein id: At3g02780.1, supported by cDNA: gi_1293564,
supported by cDNA: gi_16226826, supported by cDNA:
gi_6856561 [Arabidopsis thaliana]
gi|6225531|sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate
delta-isomerase II (IPP isomerase II) (Isopentenyl
pyrophosphate isomerase II) gi|2146741|pir||S71370
isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2) 2 -
Arabidopsis thaliana gi|1293565|gb|AAC49920.1|
isopentenyl diphosphate:dimethylallyl diphosphate
isomerase [Arabidopsis thaliana]
gi|6728984|gb|AAF26982.1|AC018363_27 isopentenyl
diphosphate:dimethylallyl diphosphate isomerase (IPP2)
[Arabidopsis thaliana]
gi|16226827|gb|AAL16273.1|AF428343_1 AT3g02780/F13E7_28
[Arabidopsis thaliana] gi|22022581|gb|AAM83247.1|
AT3g02780/F13E7_28 [Arabidopsis thaliana]
gi|23505849|gb|AAN28784.1| At3g02780/F13E7_28
[Arabidopsis thaliana]
Length = 284
Score = 353 bits (906), Expect(2) = e-115
Identities = 182/234 (77%), Positives = 197/234 (83%)
Frame = -1
Query: 1185 RSNSILSSSSSFRSRSLPSLFFSPVKNHNHNPLVASLSSHTAMGQTPTAADAGMDAVQRR 1006
RS ++ SS SSFR P SP K N S TAM T DAGMDAVQRR
Sbjct: 15 RSLALSSSFSSFRFAHRPLSSISPRKLPNFRAF-----SGTAMTDTK---DAGMDAVQRR 66
Query: 1005 LMFDDECILVDENDRVVGHDSKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSAT 826
LMF+DECILVDE DRVVGHDSKYNCHLME IE++NLLHRAFSVFLFNSKYELLLQQRS T
Sbjct: 67 LMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNT 126
Query: 825 KVTFPLVWTNTCCSHPLHRESELIEENSLGVRNAAQRKLFDELGIPAEDVPVDQFTPLGR 646
KVTFPLVWTNTCCSHPL+RESELI++N+LGVRNAAQRKL DELGI AEDVPVD+FTPLGR
Sbjct: 127 KVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGR 186
Query: 645 ILYKAPSDGKWGEHELDYLLFIVRDVNVHPNPDEVADIKYVNREELKELLRKAD 484
+LYKAPSDGKWGEHELDYLLFIVRDV V PNPDEVA+IKYV+REELKEL++KAD
Sbjct: 187 MLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKAD 240
Score = 85.5 bits (210), Expect(2) = e-115
Identities = 39/47 (82%), Positives = 41/47 (86%)
Frame = -2
Query: 491 KLMAGEGGLKLSPWFRLVVDHFLFKWWDHVERGTLGEVIDMKTIHKL 351
K AGE GLKLSPWFRLVVD+FL KWWDHVE+GTL E IDMKTIHKL
Sbjct: 238 KADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,034,213,339
Number of Sequences: 1393205
Number of extensions: 23529192
Number of successful extensions: 78204
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 69123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77239
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 76207571343
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
