Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001637A_C01 KMC001637A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89599.1| P0446G04.23 [Oryza sativa (japonica cultivar-gro... 70 1e-11
gb|AAM65097.1| unknown [Arabidopsis thaliana] 60 2e-08
ref|NP_200664.1| putative protein; protein id: At5g58560.1, supp... 60 2e-08
gb|AAM61593.1| unknown [Arabidopsis thaliana] 50 2e-05
ref|NP_196069.1| putative protein; protein id: At5g04490.1, supp... 49 3e-05
>dbj|BAB89599.1| P0446G04.23 [Oryza sativa (japonica cultivar-group)]
Length = 304
Score = 70.1 bits (170), Expect = 1e-11
Identities = 35/48 (72%), Positives = 39/48 (80%)
Frame = -2
Query: 510 MEGSWELALRFLIVSVVTAVVESLPISTELDDNLTVPLTSILVGSIVF 367
+E SW LA FL+VSV A+VES PIST LDDNLTVPLTS LVGS+VF
Sbjct: 257 IEESWSLAFGFLVVSVTAALVESHPISTHLDDNLTVPLTSFLVGSLVF 304
>gb|AAM65097.1| unknown [Arabidopsis thaliana]
Length = 307
Score = 59.7 bits (143), Expect = 2e-08
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = -2
Query: 510 MEGSWELALRFLIVSVVTAVVESLPISTELDDNLTVPLTSILVGSIVF 367
+E S + LRFL++S+ +A+VESLPIST++DDNLT+ LTS L G ++F
Sbjct: 260 IEDSGGMILRFLVISIASALVESLPISTDIDDNLTISLTSALAGFLLF 307
>ref|NP_200664.1| putative protein; protein id: At5g58560.1, supported by cDNA:
36602. [Arabidopsis thaliana]
Length = 307
Score = 59.7 bits (143), Expect = 2e-08
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = -2
Query: 510 MEGSWELALRFLIVSVVTAVVESLPISTELDDNLTVPLTSILVGSIVF 367
+E S + LRFL++S+ +A+VESLPIST++DDNLT+ LTS L G ++F
Sbjct: 260 IEDSGGMILRFLVISIASALVESLPISTDIDDNLTISLTSALAGFLLF 307
>gb|AAM61593.1| unknown [Arabidopsis thaliana]
Length = 304
Score = 49.7 bits (117), Expect = 2e-05
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = -2
Query: 501 SWELAL-RFLIVSVVTAVVESLPISTELDDNLTVPLTSILVGSIVF*Y 361
+WE L R IVS+V VVESLPI+ +LDDN++VPL +IL + F Y
Sbjct: 257 NWETTLQRVAIVSMVATVVESLPITDQLDDNVSVPLATILTAYLSFGY 304
>ref|NP_196069.1| putative protein; protein id: At5g04490.1, supported by cDNA:
125255. [Arabidopsis thaliana] gi|11290068|pir||T48445
hypothetical protein T32M21.90 - Arabidopsis thaliana
gi|7406453|emb|CAB85555.1| putative protein [Arabidopsis
thaliana]
Length = 304
Score = 48.9 bits (115), Expect = 3e-05
Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = -2
Query: 501 SWELAL-RFLIVSVVTAVVESLPISTELDDNLTVPLTSILVGSIVF*Y 361
+WE L R +VS+V VVESLPI+ +LDDN++VPL +IL + F Y
Sbjct: 257 NWETTLQRVAMVSMVATVVESLPITDQLDDNISVPLATILAAYLSFGY 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,657,428
Number of Sequences: 1393205
Number of extensions: 8128644
Number of successful extensions: 17619
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17613
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
