Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001636A_C01 KMC001636A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565522.1| SKP1 interacting partner 6 (SKIP6), putative; p... 72 6e-12
ref|NP_199710.1| putative protein; protein id: At5g48990.1, supp... 65 9e-10
ref|NP_199709.1| putative protein; protein id: At5g48980.1 [Arab... 64 2e-09
ref|NP_179628.1| unknown protein; protein id: At2g20380.1 [Arabi... 61 1e-08
ref|NP_195670.1| putative protein; protein id: At4g39600.1 [Arab... 57 1e-07
>ref|NP_565522.1| SKP1 interacting partner 6 (SKIP6), putative; protein id:
At2g21950.1, supported by cDNA: gi_20268765 [Arabidopsis
thaliana] gi|25317636|pir||B84607 hypothetical protein
At2g21950 [imported] - Arabidopsis thaliana
gi|4417287|gb|AAD20412.1| SKP1 interacting partner 6
(SKIP6), putative [Arabidopsis thaliana]
gi|20268766|gb|AAM14086.1| putative SKP1 interacting
partner 6 (SKIP6) [Arabidopsis thaliana]
gi|21689879|gb|AAM67500.1| putative SKP1 interacting
partner 6 (SKIP6) [Arabidopsis thaliana]
Length = 372
Score = 72.0 bits (175), Expect = 6e-12
Identities = 33/69 (47%), Positives = 48/69 (68%)
Frame = -1
Query: 623 MADVGGKLVVVWEYQAVKGGIGKEIDIWCAEIEVNKKQNGELWGGVCWFGKVLSVPKGSS 444
MA+ GGKL V+WE +A GG + ++IWCAEI+V ++ E+WG + W G VL+VP S+
Sbjct: 305 MANRGGKLTVLWEGKAGSGG-SRRMEIWCAEIDVGRRGEREIWGKIEWSGTVLTVPNESA 363
Query: 443 IVHCSSVAV 417
IV+C + V
Sbjct: 364 IVNCLAATV 372
>ref|NP_199710.1| putative protein; protein id: At5g48990.1, supported by cDNA:
gi_18175610 [Arabidopsis thaliana]
gi|10177189|dbj|BAB10323.1|
gene_id:K19E20.12~pir||T09376~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|18175611|gb|AAL59896.1| unknown protein [Arabidopsis
thaliana] gi|21689859|gb|AAM67490.1| unknown protein
[Arabidopsis thaliana]
Length = 372
Score = 64.7 bits (156), Expect = 9e-10
Identities = 32/69 (46%), Positives = 41/69 (59%)
Frame = -1
Query: 623 MADVGGKLVVVWEYQAVKGGIGKEIDIWCAEIEVNKKQNGELWGGVCWFGKVLSVPKGSS 444
+A+ GGKLVV+W+ G KE IWCAEI + K+ + E+WG V WF VL+VPK
Sbjct: 305 LAEYGGKLVVLWDKYVAASGY-KEKMIWCAEISLEKRNSEEIWGKVEWFDAVLTVPKSYK 363
Query: 443 IVHCSSVAV 417
V S V
Sbjct: 364 FVCAKSATV 372
>ref|NP_199709.1| putative protein; protein id: At5g48980.1 [Arabidopsis thaliana]
gi|10177188|dbj|BAB10322.1|
gene_id:K19E20.11~pir||T09376~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 399
Score = 63.9 bits (154), Expect = 2e-09
Identities = 32/68 (47%), Positives = 43/68 (63%)
Frame = -1
Query: 623 MADVGGKLVVVWEYQAVKGGIGKEIDIWCAEIEVNKKQNGELWGGVCWFGKVLSVPKGSS 444
+A+ GGKLVV+W+ G KE IWCAEI + K+ E+WG V WF VL+VPK
Sbjct: 332 LAEYGGKLVVLWDKYVPASGY-KEKMIWCAEISLEKRNGKEIWGNVEWFDAVLTVPKSYK 390
Query: 443 IVHCSSVA 420
I+ C++ A
Sbjct: 391 IL-CATAA 397
>ref|NP_179628.1| unknown protein; protein id: At2g20380.1 [Arabidopsis thaliana]
gi|25317634|pir||E84588 hypothetical protein At2g20380
[imported] - Arabidopsis thaliana
gi|4512697|gb|AAD21750.1| unknown protein [Arabidopsis
thaliana]
Length = 348
Score = 60.8 bits (146), Expect = 1e-08
Identities = 29/69 (42%), Positives = 39/69 (56%)
Frame = -1
Query: 623 MADVGGKLVVVWEYQAVKGGIGKEIDIWCAEIEVNKKQNGELWGGVCWFGKVLSVPKGSS 444
+AD GGKLVV+W G +++ +WCAEI + K+ E+WG + WF VL VPK
Sbjct: 281 LADCGGKLVVLWHKYVPASGYEEKM-VWCAEISLEKRSKKEIWGKIEWFDAVLRVPKYYQ 339
Query: 443 IVHCSSVAV 417
V S V
Sbjct: 340 FVGAKSATV 348
>ref|NP_195670.1| putative protein; protein id: At4g39600.1 [Arabidopsis thaliana]
gi|7448256|pir||T09376 hypothetical protein F23K16.230 -
Arabidopsis thaliana gi|5042176|emb|CAB44695.1| putative
protein [Arabidopsis thaliana]
gi|7270944|emb|CAB80623.1| putative protein [Arabidopsis
thaliana]
Length = 367
Score = 57.4 bits (137), Expect = 1e-07
Identities = 31/70 (44%), Positives = 40/70 (56%), Gaps = 1/70 (1%)
Frame = -1
Query: 623 MADVGGKLVVVWEYQAVKGGIGKEIDIWCAEIEVNKK-QNGELWGGVCWFGKVLSVPKGS 447
+ D GGKL+V+W+ V KE IWCAEI + KK N E+WG V WF VL+VP+
Sbjct: 299 LVDYGGKLMVLWDTY-VPESESKEKMIWCAEISLQKKCNNEEIWGTVEWFDAVLTVPEDC 357
Query: 446 SIVHCSSVAV 417
V + V
Sbjct: 358 KFVRAIAATV 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,010,577
Number of Sequences: 1393205
Number of extensions: 12014610
Number of successful extensions: 30715
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 29494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30652
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
