Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001633A_C01 KMC001633A_c01
(723 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566410.1| expressed protein; protein id: At3g12050.1, sup... 147 8e-56
gb|AAM53279.1| unknown protein [Arabidopsis thaliana] gi|2319767... 146 2e-55
gb|EAA26847.1| hypothetical protein [Neurospora crassa] 60 6e-09
gb|AAH41491.1| Similar to chromosome 14 open reading frame 3 [Xe... 56 7e-09
dbj|BAC36160.1| unnamed protein product [Mus musculus] 54 2e-08
>ref|NP_566410.1| expressed protein; protein id: At3g12050.1, supported by cDNA:
38478. [Arabidopsis thaliana]
gi|10998146|dbj|BAB03117.1| gene_id:MEC18.18~unknown
protein [Arabidopsis thaliana]
gi|12322021|gb|AAG51059.1|AC069473_21 unknown protein;
42843-40829 [Arabidopsis thaliana]
gi|21593383|gb|AAM65332.1| unknown [Arabidopsis
thaliana]
Length = 360
Score = 147 bits (372), Expect(2) = 8e-56
Identities = 67/81 (82%), Positives = 77/81 (94%)
Frame = -1
Query: 723 ARDLFEILMDENRWKGFTQSHARISKEVNGEFSIFDGSVTGMNLELQEGKLIVQRWRFGS 544
ARDL+EILMDENRWKGFTQS+A+ISK+VNG S+FDGSVTGMNLEL+EGKLIVQ+WRFGS
Sbjct: 236 ARDLYEILMDENRWKGFTQSNAKISKDVNGPISVFDGSVTGMNLELEEGKLIVQKWRFGS 295
Query: 543 WPDGMQSTVRIVFEEPESGVT 481
WPDG+ STV+IVFEEP+ GVT
Sbjct: 296 WPDGLDSTVKIVFEEPQPGVT 316
Score = 92.0 bits (227), Expect(2) = 8e-56
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = -2
Query: 488 GLPVVKLTHTDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGFGI 348
G+ +V LTHTDVPEEDRYGNATVVENTERGWRDLIF RIRAVFGFGI
Sbjct: 314 GVTIVNLTHTDVPEEDRYGNATVVENTERGWRDLIFHRIRAVFGFGI 360
>gb|AAM53279.1| unknown protein [Arabidopsis thaliana] gi|23197674|gb|AAN15364.1|
unknown protein [Arabidopsis thaliana]
Length = 360
Score = 146 bits (368), Expect(2) = 2e-55
Identities = 66/81 (81%), Positives = 77/81 (94%)
Frame = -1
Query: 723 ARDLFEILMDENRWKGFTQSHARISKEVNGEFSIFDGSVTGMNLELQEGKLIVQRWRFGS 544
ARDL+EILMDENRWKGFTQS+A+ISK+VNG S+FDGSVTG+NLEL+EGKLIVQ+WRFGS
Sbjct: 236 ARDLYEILMDENRWKGFTQSNAKISKDVNGPISVFDGSVTGINLELEEGKLIVQKWRFGS 295
Query: 543 WPDGMQSTVRIVFEEPESGVT 481
WPDG+ STV+IVFEEP+ GVT
Sbjct: 296 WPDGLDSTVKIVFEEPQPGVT 316
Score = 92.0 bits (227), Expect(2) = 2e-55
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = -2
Query: 488 GLPVVKLTHTDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGFGI 348
G+ +V LTHTDVPEEDRYGNATVVENTERGWRDLIF RIRAVFGFGI
Sbjct: 314 GVTIVNLTHTDVPEEDRYGNATVVENTERGWRDLIFHRIRAVFGFGI 360
>gb|EAA26847.1| hypothetical protein [Neurospora crassa]
Length = 326
Score = 59.7 bits (143), Expect(2) = 6e-09
Identities = 29/77 (37%), Positives = 47/77 (60%), Gaps = 2/77 (2%)
Frame = -1
Query: 723 ARDLFEILMDENRWKGFTQSHARISK--EVNGEFSIFDGSVTGMNLELQEGKLIVQRWRF 550
A +L+ D R FT++ ++ + + G+F +FDG+V+G +ELQE IVQ+WR
Sbjct: 204 ADELYATFTDPGRLAAFTRAPPKVFEGAKPGGKFVLFDGNVSGEYVELQEPTKIVQKWRL 263
Query: 549 GSWPDGMQSTVRIVFEE 499
WP G ST++I F++
Sbjct: 264 EQWPQGHYSTLKIEFDQ 280
Score = 22.7 bits (47), Expect(2) = 6e-09
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 479 VVKLTHTDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGFG 351
V+++ T VP G +V+N W + + I+ FGFG
Sbjct: 288 VMRVEWTGVP----VGQEEIVKNN---WNEYYVRSIKRTFGFG 323
>gb|AAH41491.1| Similar to chromosome 14 open reading frame 3 [Xenopus laevis]
Length = 336
Score = 55.8 bits (133), Expect(2) = 7e-09
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = -1
Query: 717 DLFEILMDENRWKGFTQSHARISKEVNGEFSIFDGSVTGMNLELQEGKLIVQRWRFGSWP 538
+L+ +L + +GFT + A ++ + G+F + G+V+G EL+ K IV WRF SWP
Sbjct: 219 ELYRVLTRQELVQGFTHAPASLTADKGGKFQLLGGNVSGEFKELEPEKHIVMSWRFKSWP 278
Query: 537 DGMQSTVRIVFEE 499
G +++ + F +
Sbjct: 279 QGHHASITLTFTD 291
Score = 26.2 bits (56), Expect(2) = 7e-09
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = -2
Query: 416 ENTERGWRDLIFQRIRAVFGFG 351
E T+ GW+ F I+ FG+G
Sbjct: 311 ERTKEGWKRYYFDGIKQTFGYG 332
>dbj|BAC36160.1| unnamed protein product [Mus musculus]
Length = 338
Score = 53.5 bits (127), Expect(2) = 2e-08
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = -1
Query: 717 DLFEILMDENRWKGFTQSHARISKEVNGEFSIFDGSVTGMNLELQEGKLIVQRWRFGSWP 538
+L+ + + + FT + A + + G+F + DG+VTG +L K I +WRF SWP
Sbjct: 221 ELYRVFTTQELVQAFTHAPAALEADRGGKFHMVDGNVTGEFTDLVPEKHIAMKWRFKSWP 280
Query: 537 DGMQSTVRIVFEEPESGVTSC 475
+G +T+ + F + C
Sbjct: 281 EGHFATITLTFIDKNGETELC 301
Score = 27.3 bits (59), Expect(2) = 2e-08
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = -2
Query: 461 TDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGFG 351
T++ E R A E T +GW+ F+ I+ FG+G
Sbjct: 298 TELCMEGRGIPAPEEERTRQGWQRYYFEGIKQTFGYG 334
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,075,198
Number of Sequences: 1393205
Number of extensions: 14768640
Number of successful extensions: 55418
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 53030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55385
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
