Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001631A_C01 KMC001631A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176663.1| hypothetical protein; protein id: At1g64830.1 [... 154 1e-36
ref|NP_671924.1| similar to chloroplast nucleoid DNA binding pro... 149 4e-35
ref|NP_198319.1| putative protein; protein id: At5g33340.1 [Arab... 148 6e-35
ref|NP_174430.1| chloroplast nucleoid DNA binding protein, putat... 143 3e-33
emb|CAD40869.1| OSJNBa0064H22.14 [Oryza sativa (japonica cultiva... 119 4e-26
>ref|NP_176663.1| hypothetical protein; protein id: At1g64830.1 [Arabidopsis
thaliana] gi|25404498|pir||E96671 hypothetical protein
F13O11.13 [imported] - Arabidopsis thaliana
gi|5042418|gb|AAD38257.1|AC006193_13 Hypothetical
Protein [Arabidopsis thaliana]
Length = 431
Score = 154 bits (389), Expect = 1e-36
Identities = 87/196 (44%), Positives = 114/196 (57%), Gaps = 2/196 (1%)
Frame = +1
Query: 100 SLLATLPFTEPSKTPSS-FTIDLIHHDSPLSPFYNSSMTRSQLIRNAAMRSISRANQLSL 276
+LL+ L + + P FTIDLIH DSP SPFYNS+ T SQ +RNA RS
Sbjct: 8 TLLSLLLLSNVNAYPKDGFTIDLIHRDSPKSPFYNSAETSSQRMRNAIRRSARS------ 61
Query: 277 SLSHSLNQLKESSPEPIIIPNNGNYLMRIYIGTPSLERLAIADTGSDLTWVQCSPCDNTK 456
+L S + +SP+ I N G YLM I IGTP + LAIADTGSDL W QC+PC++
Sbjct: 62 TLQFSNDDASPNSPQSFITSNRGEYLMNISIGTPPVPILAIADTGSDLIWTQCNPCED-- 119
Query: 457 CFAQNTPLYDPLNSSTFTLLPCDSQPCTQLPYSQYVCS-DYGDCIYAYTYGDNSYSYGGL 633
C+ Q +PL+DP SST+ + C S C L + CS D C Y TYGDNSY+ G +
Sbjct: 120 CYQQTSPLFDPKESSTYRKVSCSSSQCRALEDAS--CSTDENTCSYTITYGDNSYTKGDV 177
Query: 634 SSDSIRFDATAATPTS 681
+ D++ ++ P S
Sbjct: 178 AVDTVTMGSSGRRPVS 193
>ref|NP_671924.1| similar to chloroplast nucleoid DNA binding protein, putative;
protein id: At2g35615.1 [Arabidopsis thaliana]
Length = 447
Score = 149 bits (376), Expect = 4e-35
Identities = 78/204 (38%), Positives = 123/204 (60%), Gaps = 1/204 (0%)
Frame = +1
Query: 73 LAFFLAASCSLLATLPFTEPSKTPSSFTIDLIHHDSPLSPFYNSSMTRSQLIRNAAMRSI 252
L FFL S +L + S P +F+++LIH DSPLSP YN +T + + A +RS+
Sbjct: 7 LCFFLFFSVTLSS-------SGHPKNFSVELIHRDSPLSPIYNPQITVTDRLNAAFLRSV 59
Query: 253 SRANQLSLSLSHSLNQLKESSPEPIIIPNNGNYLMRIYIGTPSLERLAIADTGSDLTWVQ 432
SR+ + + +QL ++ + +I +G + M I IGTP ++ AIADTGSDLTWVQ
Sbjct: 60 SRSRRFN-------HQLSQTDLQSGLIGADGEFFMSITIGTPPIKVFAIADTGSDLTWVQ 112
Query: 433 CSPCDNTKCFAQNTPLYDPLNSSTFTLLPCDSQPCTQLPYSQYVCSDYGD-CIYAYTYGD 609
C PC +C+ +N P++D SST+ PCDS+ C L ++ C + + C Y Y+YGD
Sbjct: 113 CKPCQ--QCYKENGPIFDKKKSSTYKSEPCDSRNCQALSSTERGCDESNNICKYRYSYGD 170
Query: 610 NSYSYGGLSSDSIRFDATAATPTS 681
S+S G ++++++ D+ + +P S
Sbjct: 171 QSFSKGDVATETVSIDSASGSPVS 194
>ref|NP_198319.1| putative protein; protein id: At5g33340.1 [Arabidopsis thaliana]
Length = 437
Score = 148 bits (374), Expect = 6e-35
Identities = 83/207 (40%), Positives = 117/207 (56%), Gaps = 3/207 (1%)
Frame = +1
Query: 64 MHALAFFLAASCSLLATLPFTEPSKTPS-SFTIDLIHHDSPLSPFYNSSMTRSQLIRNAA 240
M +L + S LL++L + + P FT DLIH DSP SPFYN T SQ +RNA
Sbjct: 1 MASLFSSVLLSLCLLSSLFLSNANAKPKLGFTADLIHRDSPKSPFYNPMETSSQRLRNAI 60
Query: 241 MRSISRANQLSLSLSHSLNQLKESSPEPII--IPNNGNYLMRIYIGTPSLERLAIADTGS 414
RS++R + K+++P+P I N+G YLM + IGTP +AIADTGS
Sbjct: 61 HRSVNRVFHFTE---------KDNTPQPQIDLTSNSGEYLMNVSIGTPPFPIMAIADTGS 111
Query: 415 DLTWVQCSPCDNTKCFAQNTPLYDPLNSSTFTLLPCDSQPCTQLPYSQYVCSDYGDCIYA 594
DL W QC+PCD+ C+ Q PL+DP SST+ + C S CT L ++ C Y+
Sbjct: 112 DLLWTQCAPCDD--CYTQVDPLFDPKTSSTYKDVSCSSSQCTALENQASCSTNDNTCSYS 169
Query: 595 YTYGDNSYSYGGLSSDSIRFDATAATP 675
+YGDNSY+ G ++ D++ ++ P
Sbjct: 170 LSYGDNSYTKGNIAVDTLTLGSSDTRP 196
>ref|NP_174430.1| chloroplast nucleoid DNA binding protein, putative; protein id:
At1g31450.1 [Arabidopsis thaliana]
gi|25513600|pir||E86440 probable chloroplast nucleoid
DNA binding protein T8E3.12 - Arabidopsis thaliana
gi|12322538|gb|AAG51267.1|AC027135_8 chloroplast
nucleoid DNA binding protein, putative [Arabidopsis
thaliana]
Length = 445
Score = 143 bits (360), Expect = 3e-33
Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 3/198 (1%)
Frame = +1
Query: 97 CSLLATLPF--TEPSKTPSSFTIDLIHHDSPLSPFYNSSMTRSQLIRNAAMRSISRANQL 270
CSLLA F + S + T++LIH DSP SP YN T S + A +RSISR+ +
Sbjct: 9 CSLLAISFFFASNSSANRENLTVELIHRDSPHSPLYNPHHTVSDRLNAAFLRSISRSRRF 68
Query: 271 SLSLSHSLNQLKESSPEPIIIPNNGNYLMRIYIGTPSLERLAIADTGSDLTWVQCSPCDN 450
+ ++ + +I N G Y M I IGTP + AIADTGSDLTWVQC PC
Sbjct: 69 T----------TKTDLQSGLISNGGEYFMSISIGTPPSKVFAIADTGSDLTWVQCKPCQ- 117
Query: 451 TKCFAQNTPLYDPLNSSTFTLLPCDSQPCTQLPYSQYVCSDYGD-CIYAYTYGDNSYSYG 627
+C+ QN+PL+D SST+ CDS+ C L + C + D C Y Y+YGDNS++ G
Sbjct: 118 -QCYKQNSPLFDKKKSSTYKTESCDSKTCQALSEHEEGCDESKDICKYRYSYGDNSFTKG 176
Query: 628 GLSSDSIRFDATAATPTS 681
+++++I D+++ + S
Sbjct: 177 DVATETISIDSSSGSSVS 194
>emb|CAD40869.1| OSJNBa0064H22.14 [Oryza sativa (japonica cultivar-group)]
Length = 444
Score = 119 bits (298), Expect = 4e-26
Identities = 70/196 (35%), Positives = 105/196 (52%), Gaps = 4/196 (2%)
Frame = +1
Query: 70 ALAFFLAASCSLLATLPFTEPSKTPSSFTIDLIHHDSPLSPFYNSSMTRSQLIRNAAMRS 249
A A + + AT T + + L H D+ + + +R QL+R AA RS
Sbjct: 4 AAACWATGGVAAAATAATTTTTSRLKGLRVHLTHVDA------HGNYSRHQLLRRAARRS 57
Query: 250 ISRANQL-SLSLSHSLNQLKESSPEPIIIP---NNGNYLMRIYIGTPSLERLAIADTGSD 417
R ++L + + + K + + +P NG +LM + IGTP+L AI DTGSD
Sbjct: 58 HHRMSRLVARATGVPMTSSKAAGGGDLQVPVHAGNGEFLMDVSIGTPALAYSAIVDTGSD 117
Query: 418 LTWVQCSPCDNTKCFAQNTPLYDPLNSSTFTLLPCDSQPCTQLPYSQYVCSDYGDCIYAY 597
L W QC PC CF Q+TP++DP +SST+ +PC S C+ LP S+ C+ C Y Y
Sbjct: 118 LVWTQCKPC--VDCFKQSTPVFDPSSSSTYATVPCSSASCSDLPTSK--CTSASKCGYTY 173
Query: 598 TYGDNSYSYGGLSSDS 645
TYGD+S + G L++++
Sbjct: 174 TYGDSSSTQGVLATET 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 628,136,924
Number of Sequences: 1393205
Number of extensions: 14665672
Number of successful extensions: 41826
Number of sequences better than 10.0: 427
Number of HSP's better than 10.0 without gapping: 39568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41527
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
