KMC001630A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001630A_C01 KMC001630A_c01
gtctacgtacagatatttattttgaaaacttacataaaaagtgagtgggggcaattcaat
agtactcctaacatttgtaaATACATGTCCATATGTGTTAAAATTTAACTTGCTTAGAAG
TCCTTTTAACTACTAAACCAGATTTTTCTCTAACACACTTATGGTGATTGGTTCCTACTA
CAAGAAAGTTACTGAATGTGGGATAGGTTTAAAAACTTGGTGATGCATTAAATAACACTA
AATTATTACAAAAGCATAATAAAGCCAAGAAAGAATTACGAGGAGACAGTTCCTTGTGTT
TACTTTCCAAAACAGCAGCACATCACTAGATTGCATCAACTTCACACACGACATCACTGA
TCACAGACAAACTTAGATCAAGCTAATAATTTATTTTAAAGTATAAGGTTTAGAGGCTGC
ACATGCTTCAGCTCAATTCTATACCGATTATCAAAGATACCAAAAGCACTAATCGGTAAG
CTTAGTAGCCTTAATTAGCTTATTAACATATAATTAACCTCCCACACACATAATAATTAA
TATATCATCTAATAATTAACTCCATATATCTATATGGGCTCTGGGCTCAGGCAGCTAGCT
CAGACTGTGGCTACGGGTCCCACCTCCACAACACTACTGGACCTGGCCTTCATAACTTCA
GAAGCCTTGGTTCTTTAGCCTGGAACTTGACACCAAGATAGAGCTTCATGTAATCCTCAA
AAACAAACTTTGGGTACACTGGGCTTGTCTCATCTTCCTTCACCAAAGAAGGTGCTGGAG
AAATGACAGCATCATCCCCTGGATTGTAGAATGAAGCTAGAGACATTCTGGCACCATCTG
TTTGAGCAATCACCCTGTGCATCACACTCTTGTACTTCCCATGGGTTATGACCTCAAGTn
GGTCGCCGAGGTTGACGACAATGGAGTGACGCATAGG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001630A_C01 KMC001630A_c01
(937 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P31239|ACCO_PEA 1-aminocyclopropane-1-carboxylate oxidase (AC... 166 4e-40
pir||T10813 1-aminocyclopropane-1-carboxylate oxidase (EC 1.4.3.... 165 8e-40
gb|AAD28196.1|AF115261_1 1-aminocyclopropane-1-carboxylate oxida... 162 5e-39
pir||T10817 1-aminocyclopropane-1-carboxylate oxidase (EC 1.4.3.... 160 3e-38
gb|AAB70883.1| 1-aminocyclopropane-1-carboxylate oxidase [Pelarg... 160 3e-38
>sp|P31239|ACCO_PEA 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase)
(Ethylene-forming enzyme) (EFE) gi|7433199|pir||T06544
1-aminocyclopropane-1-carboxylate oxidase (EC 1.4.3.-) -
garden pea gi|169041|gb|AAA33644.1|
1-aminocyclopropane-1-carboxylate oxidase
Length = 317
Score = 166 bits (421), Expect = 4e-40
Identities = 79/91 (86%), Positives = 88/91 (95%)
Frame = -1
Query: 937 PMRHSIVVNLGDXLEVITHGKYKSVMHRVIAQTDGARMSLASFYNPGDDAVISPAPSLVK 758
PMRHSIV+NLGD LEVIT+GKYKSVMHRVIAQTDGARMS+ASFYNPGDDAVISPA +L+K
Sbjct: 208 PMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGARMSIASFYNPGDDAVISPASTLLK 267
Query: 757 EDETSPVYPKFVFEDYMKLYLGVKFQAKEPR 665
E+ETS VYPKFVF+DYMKLY+G+KFQAKEPR
Sbjct: 268 ENETSEVYPKFVFDDYMKLYMGLKFQAKEPR 298
>pir||T10813 1-aminocyclopropane-1-carboxylate oxidase (EC 1.4.3.-) ACO1 - mung
bean gi|458338|gb|AAC48921.1|
1-aminocylopropane-1-carboxylate oxidase homolog [Vigna
radiata] gi|12802439|gb|AAK07883.1|AF315316_1 ACC
oxidase [Vigna radiata] gi|1093118|prf||2102361A
aminocyclopropane carboxylate oxidase
Length = 317
Score = 165 bits (418), Expect = 8e-40
Identities = 82/92 (89%), Positives = 86/92 (93%), Gaps = 1/92 (1%)
Frame = -1
Query: 937 PMRHSIVVNLGDXLEVITHGKYKSVMHRVIAQTDGARMSLASFYNPGDDAVISPAPSLVK 758
PMRHSIV+NLGD LEVIT+GKYKSVMHRVIAQTDG RMSLASFYNPGDDAVISPAP+LVK
Sbjct: 208 PMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGTRMSLASFYNPGDDAVISPAPALVK 267
Query: 757 E-DETSPVYPKFVFEDYMKLYLGVKFQAKEPR 665
E DETS VYPKFVF DYMKLY G+KFQAKEPR
Sbjct: 268 ESDETSQVYPKFVFNDYMKLYAGLKFQAKEPR 299
>gb|AAD28196.1|AF115261_1 1-aminocyclopropane-1-carboxylate oxidase [Trifolium repens]
Length = 292
Score = 162 bits (411), Expect = 5e-39
Identities = 78/92 (84%), Positives = 88/92 (94%), Gaps = 1/92 (1%)
Frame = -1
Query: 937 PMRHSIVVNLGDXLEVITHGKYKSVMHRVIAQTDGARMSLASFYNPGDDAVISPAPSLVK 758
PMRHSIV+NLGD LEVIT+GKYKSVMHRVIAQTDGARMSLASFYNP DDA+ISPAP+L+K
Sbjct: 182 PMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGARMSLASFYNPSDDAIISPAPTLLK 241
Query: 757 EDE-TSPVYPKFVFEDYMKLYLGVKFQAKEPR 665
E+E TS +YPKFVF+DYMKLY+G+KFQAKEPR
Sbjct: 242 ENETTSEIYPKFVFDDYMKLYMGLKFQAKEPR 273
>pir||T10817 1-aminocyclopropane-1-carboxylate oxidase (EC 1.4.3.-) ACO2 - mung
bean (fragment) gi|458340|gb|AAC48922.1|
1-aminocyclopropane-1-carboxylate oxidase homolog [Vigna
radiata]
Length = 308
Score = 160 bits (405), Expect = 3e-38
Identities = 77/91 (84%), Positives = 85/91 (92%)
Frame = -1
Query: 937 PMRHSIVVNLGDXLEVITHGKYKSVMHRVIAQTDGARMSLASFYNPGDDAVISPAPSLVK 758
PMRHSIVVNLGD LEVIT+GKYKSVMHRVI QTDG RMS+ASFYNPG+DAVI+PA +LVK
Sbjct: 204 PMRHSIVVNLGDQLEVITNGKYKSVMHRVITQTDGNRMSIASFYNPGNDAVIAPAEALVK 263
Query: 757 EDETSPVYPKFVFEDYMKLYLGVKFQAKEPR 665
EDE+S VYPKFVF+DYMKLY G+KFQAKEPR
Sbjct: 264 EDESSKVYPKFVFDDYMKLYAGLKFQAKEPR 294
>gb|AAB70883.1| 1-aminocyclopropane-1-carboxylate oxidase [Pelargonium x hortorum]
Length = 323
Score = 160 bits (405), Expect = 3e-38
Identities = 75/91 (82%), Positives = 84/91 (91%)
Frame = -1
Query: 937 PMRHSIVVNLGDXLEVITHGKYKSVMHRVIAQTDGARMSLASFYNPGDDAVISPAPSLVK 758
PMRHSIV+NLGD LEVIT+GKYKSVMHRVIAQTDG RMSLASFYNPG DAVI PAP+L++
Sbjct: 208 PMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGNRMSLASFYNPGSDAVIYPAPALIE 267
Query: 757 EDETSPVYPKFVFEDYMKLYLGVKFQAKEPR 665
E+ +P+YPKFVFEDYMKLY G+KFQAKEPR
Sbjct: 268 EENQNPIYPKFVFEDYMKLYAGLKFQAKEPR 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 760,252,182
Number of Sequences: 1393205
Number of extensions: 16032837
Number of successful extensions: 30907
Number of sequences better than 10.0: 574
Number of HSP's better than 10.0 without gapping: 29730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30757
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52137106016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
GNf068d04 |
BP072408 |
1 |
400 |
| 2 |
GNf056e04 |
BP071548 |
197 |
671 |
| 3 |
GNf034h11 |
BP069878 |
205 |
544 |
| 4 |
MFB011e02_f |
BP034719 |
211 |
771 |
| 5 |
GENf031f01 |
BP059673 |
212 |
468 |
| 6 |
MF008h06_f |
BP028665 |
220 |
559 |
| 7 |
MR013e04_f |
BP076957 |
221 |
557 |
| 8 |
GENf065d02 |
BP061130 |
221 |
744 |
| 9 |
GENf049g04 |
BP060435 |
225 |
689 |
| 10 |
MF032e01_f |
BP029974 |
230 |
786 |
| 11 |
GENf063g05 |
BP061057 |
273 |
798 |
| 12 |
GENf084c08 |
BP061921 |
278 |
612 |
| 13 |
GENf011e05 |
BP058818 |
278 |
677 |
| 14 |
GENf013g08 |
BP058907 |
279 |
656 |
| 15 |
MF057f09_f |
BP031312 |
301 |
738 |
| 16 |
MF065h07_f |
BP031784 |
303 |
842 |
| 17 |
GNf072c11 |
BP072691 |
343 |
797 |
| 18 |
GNf071h07 |
BP072658 |
379 |
778 |
| 19 |
MPD003b05_f |
AV770174 |
379 |
813 |
| 20 |
MF049h01_f |
BP030896 |
379 |
886 |
| 21 |
MF072f01_f |
BP032128 |
379 |
912 |
| 22 |
GENf079d01 |
BP061736 |
379 |
803 |
| 23 |
MR015b10_f |
BP077089 |
379 |
745 |
| 24 |
GNf088f04 |
BP073880 |
379 |
776 |
| 25 |
MR094a11_f |
BP083201 |
379 |
722 |
| 26 |
GNf071g06 |
BP072647 |
379 |
812 |
| 27 |
GENf016b01 |
BP059017 |
379 |
866 |
| 28 |
GENf071b04 |
BP061388 |
379 |
912 |
| 29 |
MF070c04_f |
BP032000 |
379 |
542 |
| 30 |
GENf007c12 |
BP058626 |
385 |
849 |
| 31 |
GNf062h07 |
BP072013 |
392 |
913 |
| 32 |
MF008g03_f |
BP028655 |
404 |
621 |
| 33 |
SPD091b01_f |
BP051248 |
421 |
567 |
| 34 |
MF094e11_f |
BP033219 |
493 |
952 |
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Lotus japonicus
Kazusa DNA Research Institute