Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001628A_C01 KMC001628A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P02580|ACT3_SOYBN ACTIN 3 gi|169911|gb|AAA33940.1| actin 162 3e-39
pir||T51182 actin [imported] - Malva pusilla gi|5230841|gb|AAD41... 162 5e-39
gb|AAF82805.1| actin [Helianthus annuus] 162 5e-39
pir||T51183 actin isoform B [imported] - Mimosa pudica gi|668350... 162 5e-39
gb|AAN40685.1| actin [Stevia rebaudiana] 162 5e-39
>sp|P02580|ACT3_SOYBN ACTIN 3 gi|169911|gb|AAA33940.1| actin
Length = 376
Score = 162 bits (410), Expect = 3e-39
Identities = 80/81 (98%), Positives = 80/81 (98%)
Frame = -3
Query: 637 GNIVLSGGSTMFXGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 458
GNIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 296 GNIVLSGGSTMFLGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 355
Query: 457 MWISKGEYDESGPSIVHRKCF 395
MWISKGEYDESGPSIVHRKCF
Sbjct: 356 MWISKGEYDESGPSIVHRKCF 376
>pir||T51182 actin [imported] - Malva pusilla
gi|5230841|gb|AAD41039.1|AF112538_1 actin [Malva
pusilla]
Length = 377
Score = 162 bits (409), Expect = 5e-39
Identities = 80/81 (98%), Positives = 80/81 (98%)
Frame = -3
Query: 637 GNIVLSGGSTMFXGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 458
GNIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 356
Query: 457 MWISKGEYDESGPSIVHRKCF 395
MWISKGEYDESGPSIVHRKCF
Sbjct: 357 MWISKGEYDESGPSIVHRKCF 377
>gb|AAF82805.1| actin [Helianthus annuus]
Length = 377
Score = 162 bits (409), Expect = 5e-39
Identities = 80/81 (98%), Positives = 80/81 (98%)
Frame = -3
Query: 637 GNIVLSGGSTMFXGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 458
GNIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 356
Query: 457 MWISKGEYDESGPSIVHRKCF 395
MWISKGEYDESGPSIVHRKCF
Sbjct: 357 MWISKGEYDESGPSIVHRKCF 377
>pir||T51183 actin isoform B [imported] - Mimosa pudica
gi|6683504|dbj|BAA89214.1| actin isoform B [Mimosa
pudica]
Length = 377
Score = 162 bits (409), Expect = 5e-39
Identities = 80/81 (98%), Positives = 80/81 (98%)
Frame = -3
Query: 637 GNIVLSGGSTMFXGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 458
GNIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 356
Query: 457 MWISKGEYDESGPSIVHRKCF 395
MWISKGEYDESGPSIVHRKCF
Sbjct: 357 MWISKGEYDESGPSIVHRKCF 377
>gb|AAN40685.1| actin [Stevia rebaudiana]
Length = 377
Score = 162 bits (409), Expect = 5e-39
Identities = 80/81 (98%), Positives = 80/81 (98%)
Frame = -3
Query: 637 GNIVLSGGSTMFXGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 458
GNIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 356
Query: 457 MWISKGEYDESGPSIVHRKCF 395
MWISKGEYDESGPSIVHRKCF
Sbjct: 357 MWISKGEYDESGPSIVHRKCF 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,201,326
Number of Sequences: 1393205
Number of extensions: 12662036
Number of successful extensions: 29815
Number of sequences better than 10.0: 1288
Number of HSP's better than 10.0 without gapping: 28691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29639
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
