Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001626A_C01 KMC001626A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200479.1| SYNC1 protein (gb|AAD46681.1); protein id: At5g... 216 8e-56
ref|NP_177254.1| asparaginyl-tRNA synthetase(SYNC1) protein,puta... 216 1e-55
dbj|BAB61140.1| putative asparaginyl-tRNA synthetase [Oryza sati... 209 1e-53
ref|NP_683262.1| asparaginyl-tRNA synthetase [Thermosynechococcu... 177 4e-44
gb|ZP_00122373.1| hypothetical protein [Haemophilus somnus 129PT] 176 2e-43
>ref|NP_200479.1| SYNC1 protein (gb|AAD46681.1); protein id: At5g56680.1, supported
by cDNA: gi_5670314 [Arabidopsis thaliana]
gi|20140329|sp|Q9SW96|SYN1_ARATH Asparaginyl-tRNA
synthetase, cytoplasmic 1 (Asparagine--tRNA ligase 1)
(AsnRS 1) gi|5670315|gb|AAD46681.1|AF170909_1 SYNC1
protein [Arabidopsis thaliana]
gi|10176772|dbj|BAB09886.1| SYNC1 protein [Arabidopsis
thaliana]
Length = 572
Score = 216 bits (551), Expect = 8e-56
Identities = 102/113 (90%), Positives = 109/113 (96%)
Frame = -2
Query: 486 VIVYNYPKDIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERYDVIVERIKEMGLP 307
+IVYNYPK IKAFYMRLNDD KTVAAMDVLVPKVGELIGGSQREERYDVI +RI+EMGLP
Sbjct: 460 LIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLP 519
Query: 306 LEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGIENIRDVIPFPRYPGRADL 148
+EPYEWYLDLRRYGTVKH GFGLGFERMILFATG++NIRDVIPFPRYPG+ADL
Sbjct: 520 IEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPRYPGKADL 572
>ref|NP_177254.1| asparaginyl-tRNA synthetase(SYNC1) protein,putative; protein id:
At1g70980.1 [Arabidopsis thaliana]
gi|20140327|sp|Q9SSK1|SYN3_ARATH Asparaginyl-tRNA
synthetase, cytoplasmic 3 (Asparagine--tRNA ligase 3)
(AsnRS 3) gi|25406088|pir||B96734 hypothetical protein
F15H11.17 [imported] - Arabidopsis thaliana
gi|5902407|gb|AAD55509.1|AC008148_19 Similar to
asparaginyl-tRNA synthetases [Arabidopsis thaliana]
Length = 571
Score = 216 bits (550), Expect = 1e-55
Identities = 102/113 (90%), Positives = 108/113 (95%)
Frame = -2
Query: 486 VIVYNYPKDIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERYDVIVERIKEMGLP 307
+IVYNYPK IKAFYMRLNDD KTVAAMDVLVPKVGELIGGSQREERYDVI +RI+EMGLP
Sbjct: 459 IIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLP 518
Query: 306 LEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGIENIRDVIPFPRYPGRADL 148
+EPYEWYLDLRRYGTVKH GFGLGFERMI FATGI+NIRDVIPFPRYPG+ADL
Sbjct: 519 MEPYEWYLDLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFPRYPGKADL 571
>dbj|BAB61140.1| putative asparaginyl-tRNA synthetase [Oryza sativa (japonica
cultivar-group)] gi|15408636|dbj|BAB64053.1| putative
asparaginyl-tRNA synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 559
Score = 209 bits (533), Expect = 1e-53
Identities = 98/113 (86%), Positives = 108/113 (94%)
Frame = -2
Query: 486 VIVYNYPKDIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERYDVIVERIKEMGLP 307
VIVYNYPK+IKAFYMRLNDD KTVAAMDVLVPKVGEL+GGSQREER D++ RI++ GLP
Sbjct: 447 VIVYNYPKEIKAFYMRLNDDQKTVAAMDVLVPKVGELVGGSQREERLDLLKTRIQDAGLP 506
Query: 306 LEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGIENIRDVIPFPRYPGRADL 148
LEPYEWYLDLRR+G+VKH+GFGLGFERMILFATG+ENIRDVIPFPRYPGRADL
Sbjct: 507 LEPYEWYLDLRRFGSVKHSGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 559
>ref|NP_683262.1| asparaginyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
gi|22296200|dbj|BAC10024.1| asparaginyl-tRNA synthetase
[Thermosynechococcus elongatus BP-1]
Length = 462
Score = 177 bits (450), Expect = 4e-44
Identities = 83/112 (74%), Positives = 95/112 (84%)
Frame = -2
Query: 486 VIVYNYPKDIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERYDVIVERIKEMGLP 307
VIVY+YP IKAFYMRLNDD KTVAAMD+L PK+GE+IGGSQREER+DV+ ERI GL
Sbjct: 350 VIVYDYPAAIKAFYMRLNDDGKTVAAMDILAPKIGEIIGGSQREERFDVLQERIVTQGLD 409
Query: 306 LEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGIENIRDVIPFPRYPGRAD 151
PY WYLDLRRYG+V HAGFGLGFER++ F TG++NIRDVIPFPR PG A+
Sbjct: 410 PAPYWWYLDLRRYGSVPHAGFGLGFERLVQFMTGMDNIRDVIPFPRTPGNAE 461
>gb|ZP_00122373.1| hypothetical protein [Haemophilus somnus 129PT]
Length = 467
Score = 176 bits (445), Expect = 2e-43
Identities = 83/112 (74%), Positives = 95/112 (84%)
Frame = -2
Query: 486 VIVYNYPKDIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERYDVIVERIKEMGLP 307
V+V NYPKDIKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+ +RI EMGL
Sbjct: 355 VVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRIAEMGLK 414
Query: 306 LEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGIENIRDVIPFPRYPGRAD 151
E Y WY DLRRYGTV HAGFGLGFER+I++ TG++NIRDVIPFPR P A+
Sbjct: 415 AEDYWWYRDLRRYGTVPHAGFGLGFERLIVYVTGVQNIRDVIPFPRTPRNAN 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,742,200
Number of Sequences: 1393205
Number of extensions: 9448289
Number of successful extensions: 24046
Number of sequences better than 10.0: 562
Number of HSP's better than 10.0 without gapping: 23233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23950
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
