Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001625A_C01 KMC001625A_c01
(369 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK94906.1|AF382190_1 STAT5 [Xenopus laevis] 34 0.40
emb|CAB51861.1| mammary gland factor STAT5A [Mus musculus] 33 0.69
emb|CAA96563.1| STAT5A/MGF [Bos taurus] 33 0.90
pir||G02317 transcription activator stat5A - human gi|1151170|gb... 33 0.90
ref|NP_003143.2| signal transducer and activator of transcriptio... 33 0.90
>gb|AAK94906.1|AF382190_1 STAT5 [Xenopus laevis]
Length = 780
Score = 34.3 bits (77), Expect = 0.40
Identities = 17/56 (30%), Positives = 27/56 (47%)
Frame = +2
Query: 200 LKNQNTNNETLVSKQYGCSQMQERQPPTPITTNFNNKLAARVSRKEKTKQS*ITEE 367
LKN+NT NE+ C M+ Q ++ +F N R+ R ++ +TEE
Sbjct: 382 LKNENTRNESSGEILNNCCVMEYHQATGTLSAHFRNMSLKRIKRSDRRGAESVTEE 437
>emb|CAB51861.1| mammary gland factor STAT5A [Mus musculus]
Length = 230
Score = 33.5 bits (75), Expect = 0.69
Identities = 17/56 (30%), Positives = 27/56 (47%)
Frame = +2
Query: 200 LKNQNTNNETLVSKQYGCSQMQERQPPTPITTNFNNKLAARVSRKEKTKQS*ITEE 367
LKN+NT NE C M+ Q ++ +F N R++R ++ +TEE
Sbjct: 156 LKNENTRNECSGEILNNCCVMEYHQATGTLSAHFRNMSLKRITRADRRGAESVTEE 211
>emb|CAA96563.1| STAT5A/MGF [Bos taurus]
Length = 794
Score = 33.1 bits (74), Expect = 0.90
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 200 LKNQNTNNETLVSKQYGCSQMQERQPPTPITTNFNNKLAARVSRKEKTKQS*ITEE 367
LKN+NT NE C M+ Q ++ +F N R+ R ++ +TEE
Sbjct: 383 LKNENTRNECSGEILNNCCVMEYHQATGTLSAHFRNMSLKRIKRADRRGAESVTEE 438
>pir||G02317 transcription activator stat5A - human gi|1151170|gb|AAB06589.1|
Stat5A
Length = 794
Score = 33.1 bits (74), Expect = 0.90
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 200 LKNQNTNNETLVSKQYGCSQMQERQPPTPITTNFNNKLAARVSRKEKTKQS*ITEE 367
LKN+NT NE C M+ Q ++ +F N R+ R ++ +TEE
Sbjct: 383 LKNENTRNECSGEILNNCCVMEYHQATGTLSAHFRNMSLKRIKRADRRGAESVTEE 438
>ref|NP_003143.2| signal transducer and activator of transcription 5A; signal
transducer and activator of transcription 5 [Homo
sapiens] gi|1174462|sp|P42229|ST5A_HUMAN Signal
transducer and activator of transcription 5A
gi|736683|gb|AAA73962.1| signal transducer and activator
of transcrption gi|20072534|gb|AAH27036.1| signal
transducer and activator of transcription 5A [Homo
sapiens]
Length = 794
Score = 33.1 bits (74), Expect = 0.90
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 200 LKNQNTNNETLVSKQYGCSQMQERQPPTPITTNFNNKLAARVSRKEKTKQS*ITEE 367
LKN+NT NE C M+ Q ++ +F N R+ R ++ +TEE
Sbjct: 383 LKNENTRNECSGEILNNCCVMEYHQATGTLSAHFRNMSLKRIKRADRRGAESVTEE 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,944,876
Number of Sequences: 1393205
Number of extensions: 6771484
Number of successful extensions: 14310
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 13981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14296
length of database: 448,689,247
effective HSP length: 98
effective length of database: 312,155,157
effective search space used: 7491723768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
