Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001624A_C02 KMC001624A_c02
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit... 176 1e-43
gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit... 175 3e-43
gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon ... 161 6e-39
emb|CAA62263.1| Biotin carboxyl carrier protein [Brassica napus]... 159 2e-38
pir||S66567 biotin carboxyl carrier protein (clone BP3) - rape ... 159 2e-38
>gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit precursor [Glycine max]
Length = 284
Score = 176 bits (447), Expect = 1e-43
Identities = 87/108 (80%), Positives = 93/108 (85%), Gaps = 5/108 (4%)
Frame = -2
Query: 578 PPPAVASAP-----TKAAPALPPGKSSSSSLPQLKCPMAGTFYRSPAPGEPPFVKVGDKV 414
PPP S P +KAAPALPP K+S SS P LKCPMAGTFYRSPAPGEPPFVKVGDKV
Sbjct: 177 PPPVATSTPASSPSSKAAPALPPAKASKSSHPALKCPMAGTFYRSPAPGEPPFVKVGDKV 236
Query: 413 QKGQVICIIEAMKLMNEIEADKSGTIAEVLAEDGKPVSVDSPLFAIAP 270
QKGQVICIIEAMKLMNEIEAD+SGT+AEV+AEDGKPVSVD+PLF I P
Sbjct: 237 QKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP 284
>gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit [Glycine max]
Length = 284
Score = 175 bits (444), Expect = 3e-43
Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 6/111 (5%)
Frame = -2
Query: 584 PPPPPAVA------SAPTKAAPALPPGKSSSSSLPQLKCPMAGTFYRSPAPGEPPFVKVG 423
P PP+VA S +KAAPALPP K+S SS P LKCPMAGTFYRSPAPGEPPFVKVG
Sbjct: 174 PAAPPSVATSTPASSPSSKAAPALPPAKASKSSHPALKCPMAGTFYRSPAPGEPPFVKVG 233
Query: 422 DKVQKGQVICIIEAMKLMNEIEADKSGTIAEVLAEDGKPVSVDSPLFAIAP 270
DKVQKGQVICIIEAMKLMNEIEAD+SGT+AEV+AEDGKPVSVD+PLF I P
Sbjct: 234 DKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP 284
>gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon esculentum]
Length = 285
Score = 161 bits (407), Expect = 6e-39
Identities = 81/106 (76%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Frame = -2
Query: 584 PPPPPAVASAPTKA-APALPPGKSSSSSLPQLKCPMAGTFYRSPAPGEPPFVKVGDKVQK 408
PPP PA + AP + AP+ KS+ SSLP LK PMAGTFYRSPAPGEP FVKVGDKVQK
Sbjct: 180 PPPAPAPSPAPIQTPAPSPAAAKSADSSLPPLKSPMAGTFYRSPAPGEPAFVKVGDKVQK 239
Query: 407 GQVICIIEAMKLMNEIEADKSGTIAEVLAEDGKPVSVDSPLFAIAP 270
GQV+CIIEAMKLMNEIEAD+SGTI EV+AEDGKPVSVD+PLF I P
Sbjct: 240 GQVLCIIEAMKLMNEIEADRSGTIVEVVAEDGKPVSVDTPLFVIKP 285
>emb|CAA62263.1| Biotin carboxyl carrier protein [Brassica napus]
gi|1589042|prf||2210244C Ac-CoA carboxylase:ISOTYPE=bp3
Length = 162
Score = 159 bits (403), Expect = 2e-38
Identities = 78/105 (74%), Positives = 84/105 (79%)
Frame = -2
Query: 584 PPPPPAVASAPTKAAPALPPGKSSSSSLPQLKCPMAGTFYRSPAPGEPPFVKVGDKVQKG 405
PP PP AP+ A P + SSS P LK PMAGTFYRSP PGEPPFVKVGDKVQKG
Sbjct: 58 PPSPPVSLPAPSSAPATEKPATAPSSSHPPLKSPMAGTFYRSPGPGEPPFVKVGDKVQKG 117
Query: 404 QVICIIEAMKLMNEIEADKSGTIAEVLAEDGKPVSVDSPLFAIAP 270
QV+CIIEAMKLMNEIEA+KSGTI E+LAEDGKPVSVD+PLF I P
Sbjct: 118 QVVCIIEAMKLMNEIEAEKSGTITELLAEDGKPVSVDTPLFTIVP 162
>pir||S66567 biotin carboxyl carrier protein (clone BP3) - rape (fragment)
Length = 175
Score = 159 bits (403), Expect = 2e-38
Identities = 78/105 (74%), Positives = 84/105 (79%)
Frame = -2
Query: 584 PPPPPAVASAPTKAAPALPPGKSSSSSLPQLKCPMAGTFYRSPAPGEPPFVKVGDKVQKG 405
PP PP AP+ A P + SSS P LK PMAGTFYRSP PGEPPFVKVGDKVQKG
Sbjct: 71 PPSPPVSLPAPSSAPATEKPATAPSSSHPPLKSPMAGTFYRSPGPGEPPFVKVGDKVQKG 130
Query: 404 QVICIIEAMKLMNEIEADKSGTIAEVLAEDGKPVSVDSPLFAIAP 270
QV+CIIEAMKLMNEIEA+KSGTI E+LAEDGKPVSVD+PLF I P
Sbjct: 131 QVVCIIEAMKLMNEIEAEKSGTITELLAEDGKPVSVDTPLFTIVP 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,869,166
Number of Sequences: 1393205
Number of extensions: 12487947
Number of successful extensions: 81208
Number of sequences better than 10.0: 1077
Number of HSP's better than 10.0 without gapping: 52696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72594
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
