Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001622A_C01 KMC001622A_c01
(801 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG35658.1|AF204925_1 transcription factor WRKY4 [Petroselinu... 62 1e-08
gb|AAM65933.1| transcription factor, putative [Arabidopsis thali... 52 8e-06
ref|NP_178199.1| WRKY family transcription factor; protein id: A... 52 8e-06
gb|AAM64540.1| putative WRKY-type DNA binding protein [Arabidops... 49 9e-05
ref|NP_180072.1| WRKY family transcription factor; protein id: A... 49 9e-05
>gb|AAG35658.1|AF204925_1 transcription factor WRKY4 [Petroselinum crispum]
Length = 333
Score = 61.6 bits (148), Expect = 1e-08
Identities = 35/64 (54%), Positives = 48/64 (74%), Gaps = 4/64 (6%)
Frame = -2
Query: 779 VTLDLTKSRCS---NDSKNAEPRK-DSAKLPQVLVEQMATSLTTDPNFRAALVAAISGRL 612
+TLD+TKS+ S + +K A +K DS + Q LV+QMA+SLT DP+F+AAL AAISG++
Sbjct: 263 LTLDMTKSKKSITEDANKKATTKKIDSPEFQQFLVDQMASSLTKDPSFKAALAAAISGKI 322
Query: 611 LHQN 600
L QN
Sbjct: 323 LQQN 326
>gb|AAM65933.1| transcription factor, putative [Arabidopsis thaliana]
Length = 302
Score = 52.4 bits (124), Expect = 8e-06
Identities = 30/67 (44%), Positives = 43/67 (63%)
Frame = -2
Query: 800 SSPAPAVVTLDLTKSRCSNDSKNAEPRKDSAKLPQVLVEQMATSLTTDPNFRAALVAAIS 621
SS V T+D+ +S+ + R D ++ ++LVEQMA+SLT DPNF AAL AA++
Sbjct: 235 SSLTVPVTTVDMIESKKVTSPTS---RIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVT 291
Query: 620 GRLLHQN 600
G+L QN
Sbjct: 292 GKLYQQN 298
>ref|NP_178199.1| WRKY family transcription factor; protein id: At1g80840.1,
supported by cDNA: 6437., supported by cDNA: gi_19172387
[Arabidopsis thaliana] gi|20978791|sp|Q9SAH7|WR40_ARATH
Probable WRKY transcription factor 40 (WRKY DNA-binding
protein 40) gi|25406696|pir||A96841 hypothetical protein
F23A5.19 [imported] - Arabidopsis thaliana
gi|6503295|gb|AAF14671.1|AC011713_19 Similar to
gb|Z48431 DNA-binding protein from Avena fatua.
[Arabidopsis thaliana]
gi|19172388|gb|AAL85879.1|AF480149_1 WRKY transcription
factor 40 [Arabidopsis thaliana]
gi|25054846|gb|AAN71913.1| putative WRKY family
transcription factor [Arabidopsis thaliana]
Length = 302
Score = 52.4 bits (124), Expect = 8e-06
Identities = 30/67 (44%), Positives = 43/67 (63%)
Frame = -2
Query: 800 SSPAPAVVTLDLTKSRCSNDSKNAEPRKDSAKLPQVLVEQMATSLTTDPNFRAALVAAIS 621
SS V T+D+ +S+ + R D ++ ++LVEQMA+SLT DPNF AAL AA++
Sbjct: 235 SSLTVPVTTVDMIESKKVTSPTS---RIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVT 291
Query: 620 GRLLHQN 600
G+L QN
Sbjct: 292 GKLYQQN 298
>gb|AAM64540.1| putative WRKY-type DNA binding protein [Arabidopsis thaliana]
Length = 271
Score = 48.9 bits (115), Expect = 9e-05
Identities = 23/43 (53%), Positives = 31/43 (71%)
Frame = -2
Query: 728 EPRKDSAKLPQVLVEQMATSLTTDPNFRAALVAAISGRLLHQN 600
E +K+ + +VLV+QMA+SLT DP F AAL AISGRL+ +
Sbjct: 227 EEKKERGTIQEVLVQQMASSLTKDPKFTAALATAISGRLIEHS 269
>ref|NP_180072.1| WRKY family transcription factor; protein id: At2g25000.1,
supported by cDNA: 30071., supported by cDNA:
gi_17980963 [Arabidopsis thaliana]
gi|20978792|sp|Q9SK33|WR60_ARATH Probable WRKY
transcription factor 60 (WRKY DNA-binding protein 60)
gi|25412269|pir||A84643 probable WRKY-type DNA binding
protein [imported] - Arabidopsis thaliana
gi|4559352|gb|AAD23013.1| putative WRKY-type DNA binding
protein [Arabidopsis thaliana]
gi|28416653|gb|AAO42857.1| At2g25000 [Arabidopsis
thaliana]
Length = 271
Score = 48.9 bits (115), Expect = 9e-05
Identities = 23/43 (53%), Positives = 31/43 (71%)
Frame = -2
Query: 728 EPRKDSAKLPQVLVEQMATSLTTDPNFRAALVAAISGRLLHQN 600
E +K+ + +VLV+QMA+SLT DP F AAL AISGRL+ +
Sbjct: 227 EEKKERGTIQEVLVQQMASSLTKDPKFTAALATAISGRLIEHS 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,482,751
Number of Sequences: 1393205
Number of extensions: 12903719
Number of successful extensions: 29223
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 27549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29014
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
