Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001618A_C01 KMC001618A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK69274.1| unknown [Glycine max] 79 3e-14
ref|NP_187615.1| unknown protein; protein id: At3g10040.1 [Arabi... 72 5e-12
gb|AAM13849.2| unknown protein [Arabidopsis thaliana] 72 5e-12
ref|NP_177813.1| hypothetical protein; protein id: At1g76870.1 [... 57 1e-07
ref|NP_564136.1| expressed protein; protein id: At1g21200.1, sup... 57 2e-07
>gb|AAK69274.1| unknown [Glycine max]
Length = 408
Score = 79.0 bits (193), Expect = 3e-14
Identities = 44/80 (55%), Positives = 50/80 (62%)
Frame = +1
Query: 295 EHGYPYSAKTNNNNSNGTNNNSNNKAQSNINLRDEDEFAADDNSSADPKRKNSPWHRMKW 474
+HGY +S +T QS ++ DE F AD+ DPKRK SPW RMKW
Sbjct: 24 KHGYLFSHQTKQQ-------------QSPLSDDDEPGFPADE----DPKRKVSPWQRMKW 66
Query: 475 TDTMVRLLIMAVYYIGDEAG 534
TDTMVRLLIMAVYYIGDEAG
Sbjct: 67 TDTMVRLLIMAVYYIGDEAG 86
>ref|NP_187615.1| unknown protein; protein id: At3g10040.1 [Arabidopsis thaliana]
gi|6143872|gb|AAF04419.1|AC010927_12 unknown protein
[Arabidopsis thaliana]
Length = 418
Score = 71.6 bits (174), Expect = 5e-12
Identities = 39/79 (49%), Positives = 49/79 (61%), Gaps = 2/79 (2%)
Frame = +1
Query: 304 YPYSAKTNNNN--SNGTNNNSNNKAQSNINLRDEDEFAADDNSSADPKRKNSPWHRMKWT 477
YPY++K + S G ++ + + S ED ++ D KRK S WHRMKWT
Sbjct: 41 YPYASKPKQMSPISGGGCDDEDRGSGSGSGCNPED------SAGTDGKRKLSQWHRMKWT 94
Query: 478 DTMVRLLIMAVYYIGDEAG 534
DTMVRLLIMAV+YIGDEAG
Sbjct: 95 DTMVRLLIMAVFYIGDEAG 113
>gb|AAM13849.2| unknown protein [Arabidopsis thaliana]
Length = 431
Score = 71.6 bits (174), Expect = 5e-12
Identities = 39/79 (49%), Positives = 49/79 (61%), Gaps = 2/79 (2%)
Frame = +1
Query: 304 YPYSAKTNNNN--SNGTNNNSNNKAQSNINLRDEDEFAADDNSSADPKRKNSPWHRMKWT 477
YPY++K + S G ++ + + S ED ++ D KRK S WHRMKWT
Sbjct: 54 YPYASKPKQMSPISGGGCDDEDRGSGSGSGCNPED------SAGTDGKRKLSQWHRMKWT 107
Query: 478 DTMVRLLIMAVYYIGDEAG 534
DTMVRLLIMAV+YIGDEAG
Sbjct: 108 DTMVRLLIMAVFYIGDEAG 126
>ref|NP_177813.1| hypothetical protein; protein id: At1g76870.1 [Arabidopsis
thaliana] gi|25372950|pir||E96797 hypothetical protein
F7O12.4 [imported] - Arabidopsis thaliana
gi|12322229|gb|AAG51150.1|AC079283_7 hypothetical
protein [Arabidopsis thaliana]
Length = 385
Score = 57.4 bits (137), Expect = 1e-07
Identities = 26/87 (29%), Positives = 48/87 (54%)
Frame = +1
Query: 274 HTFNSQSEHGYPYSAKTNNNNSNGTNNNSNNKAQSNINLRDEDEFAADDNSSADPKRKNS 453
+ N + +P S + + N N + NN + ++ ++DE + + ++NS
Sbjct: 23 NAINQNQKQHHPNSRQDSGFN-NTMDTRHNNVDRGKKSMSEDDELCLLSSDGQNKSKENS 81
Query: 454 PWHRMKWTDTMVRLLIMAVYYIGDEAG 534
PW R+KW D MV+L+I A+ YIG+++G
Sbjct: 82 PWQRVKWMDKMVKLMITALSYIGEDSG 108
>ref|NP_564136.1| expressed protein; protein id: At1g21200.1, supported by cDNA:
gi_15027986, supported by cDNA: gi_20259202 [Arabidopsis
thaliana] gi|25372951|pir||C86345 hypothetical protein
F16F4.11 - Arabidopsis thaliana
gi|8920640|gb|AAF81362.1|AC036104_11 Contains weak
similarity to DNA-binding protein (GT-1a) from Nicotiana
tabacum gb|M93436. [Arabidopsis thaliana]
gi|15027987|gb|AAK76524.1| unknown protein [Arabidopsis
thaliana] gi|20259203|gb|AAM14317.1| unknown protein
[Arabidopsis thaliana]
Length = 443
Score = 56.6 bits (135), Expect = 2e-07
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Frame = +1
Query: 274 HTFNSQSEH-GYPYSAKTNNNNSNGTNNNSNNKAQSNINLRDEDEFAADDNSS------- 429
H NS+ H G P++ T + N N + Q R+++ + DD S
Sbjct: 41 HNPNSRPLHEGLPFTMVTGQTCDHHQNQNMSMSEQQKAE-REKNSVSDDDEPSFTEEGGD 99
Query: 430 -----ADPKRKNSPWHRMKWTDTMVRLLIMAVYYIGDEA 531
A+ K SPW R+KWTD MV+LLI AV YIGD++
Sbjct: 100 GVHNEANRSTKGSPWQRVKWTDKMVKLLITAVSYIGDDS 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,206,636
Number of Sequences: 1393205
Number of extensions: 13630373
Number of successful extensions: 285703
Number of sequences better than 10.0: 3259
Number of HSP's better than 10.0 without gapping: 75113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163720
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
